Pairwise Alignments

Query, 231 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

Subject, 229 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  172 bits (435), Expect = 6e-48
 Identities = 88/206 (42%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 5   LHGFGPALIAGTWMTIQLALASLALGLVLGLLGALAKTSPYSALRWLGGTYSTIVRGVPE 64
           L G+  +L+  +WMT+Q+ALASL +GL+L L+ A  + +    ++W      T++RG+PE
Sbjct: 3   LTGYSLSLVQASWMTLQIALASLLVGLLLALVFAGGEMAKLKLIKWPTTLLVTVIRGLPE 62

Query: 65  LLWVLLIYFGTISMIRGIGELFGIENLALSPFAAGTIALGLCFGAYATEVFRGALLAIPK 124
           LL VL IYFG+  ++  I   F    + +SPF +G IAL L F +YA++  RGAL A+ +
Sbjct: 63  LLVVLFIYFGSTQVLFFITGEF----IEISPFISGVIALSLIFASYASQTLRGALKAVGR 118

Query: 125 GHREAGLALGLGKRRIFTRLILPQMWRLALPGLGNLFMILMKDTALVSVIGLEEIMRRSQ 184
           G REA  ALG+     F R++LPQ  R ALPGL N +++L+KDTALVS+IG+ ++++++Q
Sbjct: 119 GQREAASALGIPPSHAFIRIVLPQAVRHALPGLMNQWLVLLKDTALVSLIGVTDLLKQAQ 178

Query: 185 IAVTASKEPFTFFLVAAFIYLCLTIV 210
           +   A+ E FT++  AA +YL +T++
Sbjct: 179 LTSAATHEAFTWYATAAVVYLVITLI 204