Pairwise Alignments

Query, 231 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

Subject, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  179 bits (453), Expect = 6e-50
 Identities = 96/238 (40%), Positives = 147/238 (61%), Gaps = 20/238 (8%)

Query: 4   DLHGFGPALIAGTWMTIQLALASLALGLVLGLLGALAKTSPYSALRWLGGTYSTIVRGVP 63
           DL G+  +++ G  +TI++A+ SL L ++LG+LGALAK +PY   R +   Y+TI+RG+P
Sbjct: 3   DLQGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIP 62

Query: 64  ELLWVLLIYFG-TISMIRGIGELFGIEN-------------------LALSPFAAGTIAL 103
           +L+ ++LI+FG  I +  G+       N                   + +SPF AG + +
Sbjct: 63  DLVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTI 122

Query: 104 GLCFGAYATEVFRGALLAIPKGHREAGLALGLGKRRIFTRLILPQMWRLALPGLGNLFMI 163
           G  FGAY  E FRGA+LA+ KG  EA  A G+     F R++LPQM R A+PG GN +++
Sbjct: 123 GFIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLV 182

Query: 164 LMKDTALVSVIGLEEIMRRSQIAVTASKEPFTFFLVAAFIYLCLTIVAMVGMHFLEKR 221
           L+K TALVS+IGLE+++R S +A  ++K PFTF++  A I+L  T V+   +  LE++
Sbjct: 183 LLKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERK 240