Pairwise Alignments

Query, 229 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

Subject, 232 a.a., L-Arginine ABC transporter, permease protein AotM (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  208 bits (529), Expect = 8e-59
 Identities = 104/220 (47%), Positives = 153/220 (69%), Gaps = 1/220 (0%)

Query: 3   WEIFIKWLPSFIDGAWLTLQLVGVSVIAGLIVAVPLGIARSSRHLAVRALPYGYIFFFRG 62
           + +  + LP +  G   TL+L+ +S+  GL+ A+PLG+ R S+   V    + Y +  RG
Sbjct: 5   YNVIYEALPLYFSGLLTTLKLLALSLFFGLLAALPLGLMRVSKQPIVNMTAWLYTYVIRG 64

Query: 63  TPLLVQLFLVYYGMAQFDVVRQSALWPYLRDPYWCAIITMTLHTAAYIAEIIRGAIQNVP 122
           TP+LVQLFL+YYG+AQF +VR+S LWP+L    +CA +   ++T+AY AEII G+++   
Sbjct: 65  TPMLVQLFLIYYGLAQFAIVRESFLWPWLSSATFCACLAFAINTSAYTAEIIAGSLRATS 124

Query: 123 HGEIEAARALGMSRSQALLHIILPRATRIGLPAYSNEVILMLKASALASTITLLELTGMA 182
           +GEIEAA+A+GMSR +    I+LP A R  LP YSNEVI+ML+ ++LAS +TL+++TG A
Sbjct: 125 NGEIEAAKAMGMSRYKLYRRILLPSALRRALPQYSNEVIMMLQTTSLASIVTLIDITGAA 184

Query: 183 RKIAARTYLHEEMFLTAGLIYLLIAFILMQGFKLLE-RWL 221
           R + A+ YL  E ++TAG+ YL + FIL++ FKL E RWL
Sbjct: 185 RTVNAQYYLPFEAYITAGVFYLCLTFILVRLFKLAERRWL 224