Pairwise Alignments

Query, 306 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

Subject, 312 a.a., Hypothetical transcriptional regulator YqhC from Pseudomonas fluorescens FW300-N2E2

 Score =  197 bits (500), Expect = 3e-55
 Identities = 107/305 (35%), Positives = 173/305 (56%), Gaps = 9/305 (2%)

Query: 1   MNQMDLHSAEETLAQRAALARLIDGLVRDDGMHPTAIDDLFLIRCSAPSELVHGLHKPAL 60
           M Q D H+A         +  L++ L   +G + +A++D+  +R + P      L+ P +
Sbjct: 1   MTQADPHTAR--------MVALMERLAPVEGYNLSALEDVRFLRSNRPLSRTPVLYDPGV 52

Query: 61  CIIVQGSKEVRLGDELYTYDALHYLVVSVTVPVAGRVLEASSGEPYLCIRLDIDPAMVAT 120
            I+ QG K   LG++LY YDA HYLVVSV VP      +AS  EP L + + +D  + + 
Sbjct: 53  VILCQGRKRGYLGNDLYVYDARHYLVVSVPVPFTMET-DASEAEPMLAVYMRLDLQLASE 111

Query: 121 LVAESAPLSQPVEGPARGVYLDRIDAPLLDATLRLVRLLASPQDIPVLAPLAMREIFYRL 180
           L+ +      P + P +G+Y   +D  L  +TLR +  +++P D  +L P  +REI+YR+
Sbjct: 112 LILQVDEALGPSDAPPKGMYASPMDDGLYASTLRFLEAMSTPGDAAILGPSLVREIYYRI 171

Query: 181 LCGRQGRHLHEIAVRDSQGHRVTRAIEWLNRNYVEPLRIEELAQRVNLSSSTLHHRFKAL 240
           L G QG  +     R     ++TRAI  ++ +Y E L +E LA+  N+S  + H  F+++
Sbjct: 172 LTGEQGGSMRAALGRQGHFGQITRAIRKIHSSYQERLDVEALAREANMSVPSFHVHFRSV 231

Query: 241 TAMSPLQYQKQLRLQEARRLLIAEGLDVSSAGYRVGYESPSQFSREYSRLFGASPVKDLA 300
           T  SP+QY K  RL +AR L++   ++ S+A + VGYES SQF RE+ RLFG +P  ++ 
Sbjct: 232 TDASPMQYLKSTRLHQARLLMLRNAMNASTAAFSVGYESASQFGREFKRLFGRTPQAEVE 291

Query: 301 RLRST 305
            +++T
Sbjct: 292 WMKAT 296