Pairwise Alignments

Query, 408 a.a., Arabinose efflux permease from Pseudomonas stutzeri RCH2

Subject, 394 a.a., integral membrane transporter protein from Sinorhizobium meliloti 1021

 Score =  162 bits (409), Expect = 2e-44
 Identities = 107/370 (28%), Positives = 176/370 (47%), Gaps = 9/370 (2%)

Query: 24  LAMGGFAIGTGEFAIMGLMPDVAEGLGISEPQVGNVISTYALGVVVGAPLLAILGSRLFR 83
           LA+G F + T  F    L+P +A     + P+ G++I+ ++L   +GAPLL+ L     R
Sbjct: 8   LAVGSFTMSTVGFVFSSLLPSIAADTHTTIPRSGHLITLFSLSYAIGAPLLSALAGAADR 67

Query: 84  RHLLLLLMGFFALGNFASALAPDYSTLMIFRFITGLPHGAYFGVAMLVAASMVPPDKRAQ 143
           R LL+  M  F +GN  +A++  ++TL++ + + G+  G +   A   A S+  P+ RA 
Sbjct: 68  RRLLVTAMLVFVVGNCIAAMSVSFTTLLLAQIVMGMASGLFAATAQAAAVSLAGPEHRAL 127

Query: 144 AVARVLMGLTVAILIGNPLATWLGQWASWRYAFALVGAIALLTVLLVALFLPLNRDEPRN 203
           A++ V+ G T A+ +G PL   +  +  WR  F  V  + L    ++ L LP      + 
Sbjct: 128 AISIVVGGTTFAVALGAPLGALIAAFWGWRGTFGAVALLGLTCAAVLWLRLPRGLSGTKL 187

Query: 204 SPLLEIRAFNRPQVWLALAISSIGFAGMFCVFSYMAPTLLNVTGVSAGWIPFALAAFGLG 263
           +      A  RP V  +L ++ +   G F + SY+AP  ++  G+S   +P  L AFG+G
Sbjct: 188 TMSERFGAIGRPGVASSLMVTFLYLTGGFMIISYLAPLAIDGAGLSQLALPGLLLAFGVG 247

Query: 264 GIVGNLVGGWLFDRLRFKAVAWLLLWSAL-VLLVFPLAAHSVWTIFPAVFAVGTMV---- 318
            ++GNL  G+L DRL    V    L SAL V L+     H +      +  +G MV    
Sbjct: 248 AVIGNLSSGYLADRLGATRVVTASLISALAVSLMIAFGLHFLTRDLAGLLLIGIMVPWGI 307

Query: 319 ---SLSPALQTHLMDVAADAQTLAAASNHAAFNVANALGPWLGGLAITAGFGWTSTGYIG 375
              +  PA  + ++  A +   L  + N +A  +  A G  +GG  +         G+  
Sbjct: 308 VGWAFPPAQASRIVGFAPEVAHLTLSLNASAIYLGIATGTAIGG-RVLENTAAADLGFFA 366

Query: 376 AATAVGGLLV 385
           A   V  L V
Sbjct: 367 ALFPVASLAV 376