Pairwise Alignments

Query, 279 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

Subject, 355 a.a., transcriptional regulator, AraC family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  112 bits (280), Expect = 1e-29
 Identities = 85/271 (31%), Positives = 125/271 (46%), Gaps = 12/271 (4%)

Query: 12  WRDAA-LPFLEARAVADGRKVCYAPHCHETFSIGAITAGASTYFNGDAQERIARGTLVLI 70
           W  A+ LP L+       R+V +A H HE +++G I  GA  +           G + L+
Sbjct: 27  WMAASRLPGLDLLRARYTRQV-FARHFHEGYALGVIEGGALRFRYLGRDHVAVSGAVNLV 85

Query: 71  NPQTVHACNPIDGRPWSYLMFYVDARWLGALQHELGVSSDGHFIPYAPIQSLDQALFNGL 130
            P   H  + +    W+Y MFY+D   +     E G+   G    +A     D  L   +
Sbjct: 86  APGETHDGHGVGDAGWAYRMFYLDPDIVRMAGEEAGLPH-GALPDFASGVLDDPELAAAI 144

Query: 131 TQLYATLR--DPQADTL----RKQSAAVEYFTLLQQTLAPA--PTQPHAEPLQQLSRAAD 182
             L+  +    P   TL    R  +    + T      APA  P +   EP   + RA D
Sbjct: 145 DALHRDMERAGPCMPTLAQETRLSAVLARWITRHAAQRAPAALPLRTGGEPAA-VRRARD 203

Query: 183 YIAEHCTEALRLEDICQAAELSPSYLIRTFKQHYGMTPHAYLLNRRIQRSQHWLRQGLDL 242
           Y+  HC + +RL D+   A LSP +L R F     + PHAYL+  R++R++  L  G   
Sbjct: 204 YLDAHCADDVRLADLAGVACLSPFHLARAFAAAVRLPPHAYLVQARVRRARQLLSAGATP 263

Query: 243 AEIALAAGFADQAHFQRTFKRQLAATPGQYR 273
           AE A AAGFADQ+H  R F+ Q+  TP ++R
Sbjct: 264 AEAAAAAGFADQSHLTRAFRAQVGVTPARFR 294