Pairwise Alignments

Query, 279 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

Subject, 278 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (280), Expect = 9e-30
 Identities = 69/249 (27%), Positives = 111/249 (44%), Gaps = 5/249 (2%)

Query: 33  YAPHCHETFSIGAITAGASTYFNGDAQERIARGTLVLINPQTVHACNPIDGRPWSYLMFY 92
           ++ H HE +++G I  GA  ++         + +++L+N   VH         WSY   Y
Sbjct: 29  FSRHTHEGYTVGVIETGAQRFYRTGGNHVAPKHSIILVNADEVHNGCSATEDGWSYRAMY 88

Query: 93  VDARWLGALQHELGVSSDGHFIPYAPIQSLDQALFNGLTQLYATLRDPQADTLRKQSAAV 152
                   +  EL  +      PY P   +       L +L  T  D   + L ++S   
Sbjct: 89  PVPAQFANINKELASNRGA---PYFPNPVVYDPQLAELLRLTFTTLDTSDNRLLRESLVY 145

Query: 153 EYFTLLQQTLAPAPTQPH--AEPLQQLSRAADYIAEHCTEALRLEDICQAAELSPSYLIR 210
              T L           H  A     L+    +I +H    + LED+   A LSP YL++
Sbjct: 146 SSLTQLMARHGRNYPCEHLGANAKPALALVKSFIDDHPAADISLEDLATLAGLSPYYLLK 205

Query: 211 TFKQHYGMTPHAYLLNRRIQRSQHWLRQGLDLAEIALAAGFADQAHFQRTFKRQLAATPG 270
            F+ +YG+ PHAY +  R++ ++  ++QG  L ++AL  GF DQ+H  R FK+ +  TPG
Sbjct: 206 QFQHYYGLPPHAYQIQARVRLAKAKIKQGTRLLDVALDCGFHDQSHLNRHFKKTVGVTPG 265

Query: 271 QYRDRTARN 279
           Q+     RN
Sbjct: 266 QFAKEIGRN 274