Pairwise Alignments

Query, 279 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

Subject, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (257), Expect = 4e-27
 Identities = 74/269 (27%), Positives = 122/269 (45%), Gaps = 10/269 (3%)

Query: 11  FWRDAALPFLEARAVADGRKVCYAPHCHETFSIGAITAGASTYFNGDAQERIARGTLVLI 70
           +WR   L  +E  + A+     +  H H  + +G +T GA  + N  ++ ++ +  L  +
Sbjct: 9   YWRHPNLSGIEL-SQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQHGLSTL 67

Query: 71  NPQTVHACNPIDGRPWSYLMFYVDARWLGALQHELGVSSDGHFIPYAPIQSLDQALFNGL 130
           NP   H     D   +   +  +   ++ A+  E+G ++  HF     I   D AL+   
Sbjct: 68  NPDETHDGQSRDAEGYRVKVMSIPVDFMNAISQEMGQAT--HFFNAPMID--DSALYQYF 123

Query: 131 TQLYATLRDPQADTLRKQSAAVEYFTLLQQTLAPAPT----QPHAEPLQQLSRAADYIAE 186
            QL+  L   Q   L  +S  + +  LL  T  PA T    Q     LQQL+     I +
Sbjct: 124 IQLHNLLTQEQCTELAAESHLLNFMQLLL-TRHPAGTLKLGQDQGLSLQQLNLIKQKIHD 182

Query: 187 HCTEALRLEDICQAAELSPSYLIRTFKQHYGMTPHAYLLNRRIQRSQHWLRQGLDLAEIA 246
              +  +LE +     LS    +R FKQ  GMTPHAYL   R++ ++  L  G  + ++A
Sbjct: 183 EPWQNTQLEGLANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLTHGTLVVDVA 242

Query: 247 LAAGFADQAHFQRTFKRQLAATPGQYRDR 275
              GF DQ+H  + FK+    +P Q++ R
Sbjct: 243 QQLGFFDQSHLNKAFKQAFLLSPVQFQRR 271