Pairwise Alignments

Query, 279 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

Subject, 274 a.a., putative helix-turn-helix AraC-type transcriptional regulator from Klebsiella michiganensis M5al

 Score =  108 bits (270), Expect = 1e-28
 Identities = 78/269 (28%), Positives = 125/269 (46%), Gaps = 21/269 (7%)

Query: 10  RFWRDAALPFLEARAVADGRKVCYAPHCHETFSIGAITAGASTYFNGDAQERIARGTLVL 69
           RF   A LP +E       R   + PH HE F IGAI  GA  +    +Q   +  ++V 
Sbjct: 16  RFRHLAQLPGVELYHAHISR-YAFEPHTHEAFGIGAIELGAERFRYRGSQHVASVNSIVT 74

Query: 70  INPQTVHACNPIDGRPWSYLMFYVDARWLGALQHELGVSSDGHF-----IPYAPIQSLDQ 124
           +NP  +H         W Y M Y+D   L        V+ + H+     +   P++S  +
Sbjct: 75  MNPDELHTGEAETADGWRYRMIYLDPDTLEE------VTGERHWWFSEVVRQDPLRS--R 126

Query: 125 ALFNGLTQLYATLRDPQADTLRKQSAAVEYFTLLQQTLAPAPTQPHAEPLQQLSRAADYI 184
            + N +  L+ T      D L +Q   ++     +     A   P A    +  R  DY+
Sbjct: 127 QIGNLIYGLWHT-----DDPLAQQGLLLDLIDTFRPFAHHAAALPEAR--HRFERVRDYL 179

Query: 185 AEHCTEALRLEDICQAAELSPSYLIRTFKQHYGMTPHAYLLNRRIQRSQHWLRQGLDLAE 244
            ++    + L+++ Q A LSP +  R FK H+ +TPH  L+  R+ R++ +L  G+  A+
Sbjct: 180 HDNYMRTVTLDELAQVAALSPYHFQRQFKAHFYVTPHQMLMAIRLWRAKAFLTHGMPAAD 239

Query: 245 IALAAGFADQAHFQRTFKRQLAATPGQYR 273
           +ALAAG  DQ+H  R F R+   TP +Y+
Sbjct: 240 VALAAGLTDQSHLTRAFTRRYGITPVRYQ 268