Pairwise Alignments

Query, 279 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

Subject, 278 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  108 bits (270), Expect = 1e-28
 Identities = 68/249 (27%), Positives = 113/249 (45%), Gaps = 5/249 (2%)

Query: 33  YAPHCHETFSIGAITAGASTYFNGDAQERIARGTLVLINPQTVHACNPIDGRPWSYLMFY 92
           ++ H HE +++G I  GA  ++         + +++L+N   VH         WSY   Y
Sbjct: 29  FSRHTHEGYTVGVIETGAQRFYRTGGNHVAPKHSIILVNADEVHNGCSATEDGWSYRAMY 88

Query: 93  VDARWLGALQHELGVSSDGHFIPYAPIQSLDQALFNGLTQLYATLRDPQADTLRKQSAAV 152
                   +  E   +    + P   +Q  + A    LT  ++TL D   + L ++S   
Sbjct: 89  PVPAQFANITQEFTSTRGAPYFPQPVVQDPELAELLRLT--FSTL-DTSDNRLLRESLVY 145

Query: 153 EYFTLLQQTLAPAPTQPH--AEPLQQLSRAADYIAEHCTEALRLEDICQAAELSPSYLIR 210
              T L           H  A     L+    +I +H    + LE++   A LSP YL+R
Sbjct: 146 SSLTQLMARHGRNYPCEHLGANAKPALALVKSFIDDHPAADISLEELATLAGLSPYYLLR 205

Query: 211 TFKQHYGMTPHAYLLNRRIQRSQHWLRQGLDLAEIALAAGFADQAHFQRTFKRQLAATPG 270
            F++ YG+ PHAY    R++ ++  + QG+ L ++A+  GF DQ+H  R FK+ +  TPG
Sbjct: 206 QFQRCYGLPPHAYQTQARVRLAKQKIGQGIKLLDVAMECGFHDQSHLNRHFKKTVGLTPG 265

Query: 271 QYRDRTARN 279
           Q+     RN
Sbjct: 266 QFAKGIGRN 274