Pairwise Alignments

Query, 1360 a.a., ATP-dependent helicase HrpA from Pseudomonas stutzeri RCH2

Subject, 1303 a.a., ATP-dependent RNA helicase HrpA from Pseudomonas fluorescens FW300-N2E3

 Score = 2125 bits (5507), Expect = 0.0
 Identities = 1066/1360 (78%), Positives = 1185/1360 (87%), Gaps = 57/1360 (4%)

Query: 1    MTDATPAIDTLLKNLDQALFADRHRLRRQLHELRKQPDEAKLAQWLERFQASVAKVEARR 60
            MTD +P+ID LLKNLD A+ ADRHRLRRQL ELRK+PDEAKLA W+ R QAS  +V ARR
Sbjct: 1    MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLALWVTRMQASCDQVLARR 60

Query: 61   RSVPSIRYDDSLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLI 120
             S+P IRYDDSLPIAAKRDEIK AL KHQVL+IAGETGSGKTTQLPKICLEIGRG HGLI
Sbjct: 61   ASLPLIRYDDSLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI 120

Query: 121  GHTQPRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQHD 180
            GHTQPRR+AARSVA+RVAEE+ TPLG LVGYQVRFEDQS  ++LIKLMTDGILLAETQ+D
Sbjct: 121  GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQND 180

Query: 181  RFLERYDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHFDGAP 240
            R+LERYDTIIVDEAHERSLNIDFLLG+LKTLLPRRPDLKVIITSATIDL+RFS+HFD AP
Sbjct: 181  RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP 240

Query: 241  IVEVSGRTYPVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSVGKRPGDV 300
            IVEVSGRT+PV+TWYRPL  E DE+GNRVEDDLTVDQ ILA LDEI A+E+S  + PGDV
Sbjct: 241  IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV 300

Query: 301  LVFLPGEREIRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATNVAET 360
            LVFLPGEREIRDAA++LRKA LK TE+LPLYARL+PAEQQ+IFQ  PGR++VLATNVAET
Sbjct: 301  LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET 360

Query: 361  SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYS 420
            SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEA+SQASANQRKGRCGRVEPGICIRLYS
Sbjct: 361  SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYS 420

Query: 421  EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELS 480
            EEDF+GRPEFTDPEILRTNLAAVILQMLHLRLG+I DFPFIEPPDGKAISDGFNLLQELS
Sbjct: 421  EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS 480

Query: 481  AVNRENQLTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADRQ 540
            AV+R +QLTP+GRQLARLP+DPR+GRMLLEAA+ GSL EVLIVASA+S+QD RERP +RQ
Sbjct: 481  AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ 540

Query: 541  QAADQAHAQWKDPDSDFAALINLWRGFEEKRQELGSNPLRTWCRKNFLNYLRLREWRDAH 600
            QAADQAHAQWKD DSDFA L+NLWRGFEE+RQ L ++PLR WCRKNFLNYLRLREWRD+H
Sbjct: 541  QAADQAHAQWKDVDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH 600

Query: 601  RQLTLIARELKLGSGRSADGSGQAAHADKARRVEDGEASSALSAGVSTQPAPTKDTKVNV 660
            RQL+LI R+                                +   ++ +PA         
Sbjct: 601  RQLSLICRD--------------------------------MQLSLNKEPA--------- 619

Query: 661  ILRQQAEASEAAQKAKSYASVHKAILAGLLSQIGNKTEEGDFLGARQRRFWVHPSSVIGR 720
                             Y  +HKA+L+GLLSQIG KTE+GD+LGARQRRFW+HPSS +G+
Sbjct: 620  ----------------DYPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSGLGK 663

Query: 721  KKPNWLMAAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQV 780
            K+P WLM AELVETTKL+ARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ+
Sbjct: 664  KRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQI 723

Query: 781  TLYGMIVVGRRPVHYGPIDPPAARELFIREGLVRGEINSRARALSANRELLERLDELEAK 840
            TL+G+IVVGRRPVHYGPIDP  +RELFIRE LVRGEI S+A+ L AN +LLE+LDELEAK
Sbjct: 724  TLFGLIVVGRRPVHYGPIDPVTSRELFIREALVRGEIQSKAKCLFANEQLLEQLDELEAK 783

Query: 841  ARRRDILADEETLFDYYDARLPADIYQTASFENWYKRESAKNPQLLIMREEDVLAREASE 900
            ARRRDILADEETLF +YDARLPA+I+QTA+F++WY+  S K+PQLLIMREEDVLAREASE
Sbjct: 784  ARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLAREASE 843

Query: 901  VTAAQYPDYLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRSERLDWLVPGLLETK 960
            VTAA YPD LR+G+L LPL YHFEPNHPRDGVTLRVPAPLLP L  ERL+WLVPG++E K
Sbjct: 844  VTAAHYPDTLRLGDLTLPLSYHFEPNHPRDGVTLRVPAPLLPALPPERLEWLVPGVIEAK 903

Query: 961  AVALVRNLPKALRKNFVPVPDFVGAALARIAFGEGSLPEALGRELLRMTGARVSDDAWAE 1020
             +ALVRNLPKALRKNFVPVPDFV AAL R+ F EGSLP ALGRELLRMTGARVSD+AW E
Sbjct: 904  CIALVRNLPKALRKNFVPVPDFVKAALQRVTFAEGSLPHALGRELLRMTGARVSDEAWTE 963

Query: 1021 AAAGLESHLKMNIEVVDARGKFLGEGRDLAELTARFAEASQAALAPPQQKAEQKPVEAKG 1080
            AA  +ESHL+MN+E+VD +GKFLGEGRDLAELTARFAEASQAALA PQ    Q+PVEAK 
Sbjct: 964  AAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVEAKV 1023

Query: 1081 FAQVAEKAQAKMAGLSMTVYPALVEEAGVVKEGRFPTQAEAEWQHRRALQRLLLQQLAEP 1140
            FA VAEK Q K+AGLSMTVYPALVEEAG VKEGRF T AEAE+QHRRALQRLL+QQLAEP
Sbjct: 1024 FAAVAEKTQQKIAGLSMTVYPALVEEAGSVKEGRFSTPAEAEYQHRRALQRLLMQQLAEP 1083

Query: 1141 AKYLRNKLPGLTELGLLYRDMGKVDALVEDILLASLDSCILDGEAQLPRDGAALASLAER 1200
            AK+LR KLPGLTELGL+YR++G++D+LVEDILLASLDSCILDGEA LPRDGA LASLAER
Sbjct: 1084 AKFLRGKLPGLTELGLMYRELGRIDSLVEDILLASLDSCILDGEASLPRDGAGLASLAER 1143

Query: 1201 KRGDWTAHAERLARLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYPGFVRE 1260
            KRG WT HAERLA+LTLE LK WH LQKRFKGKIDLAQAVALNDIK QL +LVYPGFVRE
Sbjct: 1144 KRGAWTEHAERLAKLTLETLKLWHALQKRFKGKIDLAQAVALNDIKQQLSHLVYPGFVRE 1203

Query: 1261 TPAEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQTRLNKHLQEGKRDAE 1320
            TP +WLKE PRYLKA+EQRFEK+GAQ+Q+DRVWSGEL+G W QYQTR NKH QEGKRD +
Sbjct: 1204 TPMQWLKELPRYLKAVEQRFEKLGAQVQKDRVWSGELSGLWTQYQTRANKHAQEGKRDPQ 1263

Query: 1321 LALYRWMLEEYRVSLWAQQLGTRMAVSDKRLNKQWSQVEP 1360
            L LYRW LEEYRVSL+AQQLGT++ +SDKRL+KQW+QVEP
Sbjct: 1264 LELYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWTQVEP 1303