Pairwise Alignments

Query, 1360 a.a., ATP-dependent helicase HrpA from Pseudomonas stutzeri RCH2

Subject, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

 Score = 1165 bits (3013), Expect = 0.0
 Identities = 648/1353 (47%), Positives = 851/1353 (62%), Gaps = 82/1353 (6%)

Query: 10   TLLKNLDQALFADRHRLRRQLHELRKQPDEAKLAQWLERFQASVAK----VEARRRSVPS 65
            +L K L + L  DR R  +++    K  +E+      +     +A+    VE R++ +P 
Sbjct: 21   SLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPK 80

Query: 66   IRYDDSLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQP 125
            I Y   LP++ KRD+I  A+  HQV+++AGETGSGKTTQLPKIC E+GRG +GLIGHTQP
Sbjct: 81   IEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQP 140

Query: 126  RRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQHDRFLER 185
            RRLAARSVA R+AEE+ T LG  VGY+VRF DQ  D + IKLMTDGILLAE Q+DRFL +
Sbjct: 141  RRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQ 200

Query: 186  YDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHFDGAPIVEVS 245
            YDTII+DEAHERSLNIDF+LG+LK LLPRRPDLKVIITSATID +RFS+HF  API+EVS
Sbjct: 201  YDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVS 260

Query: 246  GRTYPVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSVGKRPGDVLVFLP 305
            GRTYPVE  YRPLA + D + +R  D L   +GI  A+DE+        +  GD+L+F+ 
Sbjct: 261  GRTYPVEVRYRPLAGDDDSESDR--DQL---EGIFQAVDEL------CDEGLGDILIFMN 309

Query: 306  GEREIRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATNVAETSLTVP 365
            GEREIRD A+ L K NL+ TE++PLYARL+  EQ KIFQP  GR+IVLATNVAETSLTVP
Sbjct: 310  GEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVP 369

Query: 366  GIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSEEDFL 425
            GI+YVID GTARISRYSYR KVQRLPIE +SQASANQRKGRCGR E GICIRLYSEEDFL
Sbjct: 370  GIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFL 429

Query: 426  GRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELSAVNRE 485
             RPEFTDPEILRTNLA+VILQM  L LGDI+ FPF+E PD + I DG  LL+EL A+N +
Sbjct: 430  SRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQ 489

Query: 486  -----NQLTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADRQ 540
                  +LT  G+QLARLPIDPRL RM+LEA++ G L EV+I+ASALS+QD RERP+D+Q
Sbjct: 490  IKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQ 549

Query: 541  QAADQAHAQWKDPDSDFAALINLWRGFEEKRQELGSNPLRTWCRKNFLNYLRLREWRDAH 600
            Q+AD  H ++   DSDF  L+NLW    ++++ L SN  R  C+ ++LNYLR+REW+D +
Sbjct: 550  QSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVY 609

Query: 601  RQLTLIARELKLGSGRSADGSGQAAHADKARRVEDGEASSALSAGVSTQPAPTKDTKVNV 660
             QL    RE+         GS  A H             SA+  G+              
Sbjct: 610  TQLHQSTREMGF-KLNDEPGSYHAVH-------------SAILVGL-------------- 641

Query: 661  ILRQQAEASEAAQKAKSYASVHKAILAGLLSQIGNKTEE-GDFLGARQRRFWVHPSSVIG 719
                                         LS IG K +E  ++ GAR  RF + P+S + 
Sbjct: 642  -----------------------------LSHIGMKDQEKNEYHGARNARFNIFPASGLF 672

Query: 720  RKKPNWLMAAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ 779
            +K+P W+M+AELVET+KL+AR+VAKIEPDWIEPLA HL K+++ EPHW KK   V+AYE+
Sbjct: 673  KKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEK 732

Query: 780  VTLYGMIVVGRRPVHYGPIDPPAARELFIREGLVRGEINSRARALSANRELLERLDELEA 839
            V LYG+ +V +R V+YG IDP  +RE+FIR  LV G+  ++      NR LL  ++ELE 
Sbjct: 733  VMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEH 792

Query: 840  KARRRDILADEETLFDYYDARLPADIYQTASFENWYKRESAKNPQLLIMREEDVLAREAS 899
            K+RRRDIL D+E LF +YD R+  ++     F+ W+K  S K P LL   +E +   +AS
Sbjct: 793  KSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDAS 852

Query: 900  EVTAAQYPDYLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRSERLDWLVPGLLET 959
             +T   YP++   G L+L L Y FEP    DGVT+ +P P+L Q+     DW +PGL   
Sbjct: 853  HITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHE 912

Query: 960  KAVALVRNLPKALRKNFVPVPDFVGAALARIAFGEGSLPEALGRELLRMTGARVSDDAWA 1019
              V+L+++LPK LRKNFVP P++  A LAR+   E  L +A+ +EL RMTG  V  + W 
Sbjct: 913  LVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDW- 971

Query: 1020 EAAAGLESHLKMNIEVVDARGKFLGEGRDLAELTARFAEASQAALAP-PQQKAEQKPVEA 1078
                 L +HLK+    VD R + L E  DL EL     E  Q  L+       EQ+ +  
Sbjct: 972  -KLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHT 1030

Query: 1079 KGFAQVAEKAQAKMAGLSMTVYPALVEEAGVVKEGRFPTQAEAEWQHRRALQRLLLQQLA 1138
              F ++ +  Q K  G  +  YPALV++   V+   F T+ E     R   +RL+L  + 
Sbjct: 1031 WSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVP 1090

Query: 1139 EPAKYLRNKLPGLTELGLLYRDMGKVDALVEDILLASLDSCILDGEAQLPRDGAALASLA 1198
             P KYL   LP  ++LGL +   GKV  L++D +   +D  +++    +  +  A  +L 
Sbjct: 1091 SPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDK-LIEERGGMVWEPQAFEALK 1149

Query: 1199 ERKRGDWTAHAERLARLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYPGFV 1258
            E  R +       +A+    IL   + + KR KGK+D   A AL+D+KAQ+  L++ GF 
Sbjct: 1150 EHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFA 1209

Query: 1259 RETPAEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQTRLNKHLQEGKRD 1318
             E   + L +  RY++AIE+R EK+     +DR+   ++     +Y+  LNK  +     
Sbjct: 1210 TECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIP 1269

Query: 1319 AELALYRWMLEEYRVSLWAQQLGTRMAVSDKRL 1351
              +   RWMLEE RVS +AQQLGT   VSDKR+
Sbjct: 1270 DNVREIRWMLEELRVSYFAQQLGTPYPVSDKRI 1302