Pairwise Alignments

Query, 1360 a.a., ATP-dependent helicase HrpA from Pseudomonas stutzeri RCH2

Subject, 1295 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella loihica PV-4

 Score = 1204 bits (3116), Expect = 0.0
 Identities = 649/1349 (48%), Positives = 873/1349 (64%), Gaps = 85/1349 (6%)

Query: 15   LDQALFADRHRLRRQLHELRKQPD----EAKLAQWLERFQASVAKVEARRRSVPSIRYDD 70
            L+Q   AD  R++R+LH L+KQ D    +  LAQ  E+  A+ AKVE+RR++ P I Y D
Sbjct: 13   LNQCFQADASRIKRRLHRLKKQADGEQKDEALAQLEEQAIAAAAKVESRRQNRPEISYPD 72

Query: 71   SLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQPRRLAA 130
            +LP++ KR EI  A+  +QV+++AGETGSGKTTQLPKICLE+G G  GLIGHTQPRRLAA
Sbjct: 73   ALPVSQKRGEIAEAIANNQVVIVAGETGSGKTTQLPKICLELGLGTRGLIGHTQPRRLAA 132

Query: 131  RSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQHDRFLERYDTII 190
            RSVATRVAEE+ +PLGE+VG++VRF D  K +S IKLMTDGILLAE   D++L++YDTII
Sbjct: 133  RSVATRVAEELNSPLGEVVGFKVRFADAIKPTSYIKLMTDGILLAELSSDKYLDQYDTII 192

Query: 191  VDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHFDGAPIVEVSGRTYP 250
            +DEAHERSLNIDF+LG+LK++L RRPDLKVIITSATID++RFS+HF+ AP++EVSGRTYP
Sbjct: 193  IDEAHERSLNIDFILGYLKSVLKRRPDLKVIITSATIDVERFSKHFNNAPVIEVSGRTYP 252

Query: 251  VETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSVGKRPGDVLVFLPGEREI 310
            VET YRPL  E DED       L +  GI AA++E+ A      + PGD+L+FL GEREI
Sbjct: 253  VETRYRPLVGEQDED-------LDLTDGIFAAVEELMA------EGPGDILIFLNGEREI 299

Query: 311  RDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATNVAETSLTVPGIRYV 370
            RD A+ L K   + TEVLPLYARL+  EQ K+F+   GR+IVLATNVAETSLTVPGI+YV
Sbjct: 300  RDLADQLNKQQYRDTEVLPLYARLSYGEQSKVFKSHRGRRIVLATNVAETSLTVPGIKYV 359

Query: 371  IDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSEEDFLGRPEF 430
            ID GTARISRYSYR KVQRLPIE +SQASANQR+GRCGRV PGICIRLY E DF  RPEF
Sbjct: 360  IDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVAPGICIRLYDEADFNNRPEF 419

Query: 431  TDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELSAVNREN---Q 487
            TDPEILRTNLA+VILQML + LGDI+ FPFI+PPD + I DGF LL+EL +V +     Q
Sbjct: 420  TDPEILRTNLASVILQMLSIGLGDIEGFPFIQPPDARYIRDGFLLLEELQSVRKHKGQLQ 479

Query: 488  LTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADRQQAADQAH 547
            LTP+GRQLA +P+DPRL RM+++A + G L E L++ + LS+QD RERP D++QAAD+AH
Sbjct: 480  LTPLGRQLASIPVDPRLARMVVQAKEYGCLHETLVITAGLSIQDPRERPMDKKQAADEAH 539

Query: 548  AQWKDPDSDFAALINLWRGFEEKRQELGSNPLRTWCRKNFLNYLRLREWRDAHRQLTLIA 607
             ++ D DSDF A + LW   +E+++ L ++  R  C++ FL YLR+REW+D + QL    
Sbjct: 540  RRFNDKDSDFIAWVKLWDHIKEQQKALSASQFRKLCKQEFLAYLRVREWQDLYTQLR--- 596

Query: 608  RELKLGSGRSADGSGQAAHADKARRVEDGEASSALSAGVSTQPAPTKDTKVNVILRQQAE 667
                           QA H  K +              ++++PA                
Sbjct: 597  ---------------QAVHDLKWK--------------LNSEPA---------------- 611

Query: 668  ASEAAQKAKSYASVHKAILAGLLSQIGNKTEEGDFLGARQRRFWVHPSSVIGRKKPNWLM 727
                      Y  +HK++L GLLS IG K ++ ++LGAR R+F+V P S + +K P W+M
Sbjct: 612  ---------DYELLHKSLLTGLLSHIGFKDKDNEYLGARNRKFFVFPGSPLAKKGPKWIM 662

Query: 728  AAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQVTLYGMIV 787
            AAE+ ET++LFAR  AKI+P+W+EPLAGHL+KK++ EPH+E K+G VVA E   LYG+ +
Sbjct: 663  AAEMTETSRLFARCCAKIQPEWVEPLAGHLVKKSYVEPHFEAKQGSVVALENQQLYGLTI 722

Query: 788  VGRRPVHYGPIDPPAARELFIREGLVRGEINSRARALSANRELLERLDELEAKARRRDIL 847
            V RR V YGP++P  ARE+FIR  L  GE+ ++      NR L++ ++ LE K+RRRDIL
Sbjct: 723  VNRRRVQYGPVEPVEAREIFIRSALAEGELRTKEAFFVNNRALIDDIEALEHKSRRRDIL 782

Query: 848  ADEETLFDYYDARLPADIYQTASFENWYKRESAKNPQLLIMREEDVLAREASEVTAAQYP 907
             DE+ L D+Y+AR+P  IY       W+K+E  + P LL    E ++ R    ++A  +P
Sbjct: 783  VDEQALVDFYEARIPEGIYNAPKLLTWWKQEKKRQPHLLDFEREQLMKRSDEHISALDFP 842

Query: 908  DYLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRSERLDWLVPGLLETKAVALVRN 967
            D    G   LPL YHFEP    DGV++ +P  LL Q+ ++  DWLVPGL E K  AL+++
Sbjct: 843  DSWHQGNFNLPLSYHFEPADVDDGVSVHLPVALLNQIEAQGFDWLVPGLREEKITALIKS 902

Query: 968  LPKALRKNFVPVPDFVGAALARIA----FGEGSLPEALGRELLRMTGARVSDDAWAEAAA 1023
            LPK LR+NFVP PD+  A L  +A      E SL EA+ ++LLRM+G R+S D +     
Sbjct: 903  LPKTLRRNFVPAPDYARACLQAMANTNSSSETSLLEAMCKQLLRMSGVRISVDDF--DLT 960

Query: 1024 GLESHLKMNIEVVDARGKFLGEGRDLAELTARF-AEASQAALAPPQQKAEQKPVEAKGFA 1082
             L  HL +N +V D +GK + +GR+L +L  +     +QA     +   EQ  +    F 
Sbjct: 961  QLAPHLLINFKVEDDKGKLIAQGRELEQLKDKLQGRVTQAIRNVAESGIEQSELTQWSFG 1020

Query: 1083 QVAEKAQAKMAGLSMTVYPALVEEAGVVKEGRFPTQAEAEWQHRRALQRLLLQQLAEPAK 1142
             + ++ + K     +  +PALV+    V    F  + EA   H+  LQRLLL  +  P K
Sbjct: 1021 DLPKQYEKKRGNFQVKAFPALVDNKDSVAIKLFDDEHEAGRCHKAGLQRLLLLNMPSPVK 1080

Query: 1143 YLRNKLPGLTELGLLYRDMGKVDALVEDILLASLDSCILDGEAQLPRDGAALASLAERKR 1202
            +L+N LP   +L + +   G+V  L++DIL A++   +LD +    R         +  R
Sbjct: 1081 HLQNTLPNKAKLAMYFNPFGQVQYLIDDILSAAVQQ-LLDEKGLDVRSAEQFEQAKDVVR 1139

Query: 1203 GDWTAHAERLARLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYPGFVRETP 1262
             D    A ++A    EIL  +  ++KR KGKI L  A A++DI+ QL NLV+ GFV +  
Sbjct: 1140 QDLNPTAAKIALQVEEILTLYQKVKKRLKGKISLDIAFAMSDIQTQLDNLVFKGFVEQCG 1199

Query: 1263 AEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQTRLNKHLQEGKRDAELA 1322
             + L +  RY+KAI+ R +K+     RDR+    +    +    +L K  +       L 
Sbjct: 1200 WQRLSDLIRYIKAIDNRLDKLPVDPNRDRLHLHSINNVQQTLAAQLAKVPRSAPVPEALQ 1259

Query: 1323 LYRWMLEEYRVSLWAQQLGTRMAVSDKRL 1351
              RWM+EEYRVS +AQ LGT   +S+KR+
Sbjct: 1260 EARWMIEEYRVSCFAQVLGTAYPISEKRI 1288