Pairwise Alignments

Query, 1360 a.a., ATP-dependent helicase HrpA from Pseudomonas stutzeri RCH2

Subject, 1311 a.a., RNA helicase, ATP-dependent DEAH box, HrpA type from Marinobacter adhaerens HP15

 Score = 1260 bits (3260), Expect = 0.0
 Identities = 658/1364 (48%), Positives = 898/1364 (65%), Gaps = 77/1364 (5%)

Query: 3    DATPAIDTLLKNLDQALFADRHRLRRQLHELRKQP---DEAKLAQWLERFQASVAKVEAR 59
            D   A+  +++ LD     +  R+ + +   + +P   D  K+A WLER    + KV+ R
Sbjct: 17   DGEAAVKAMMEQLDACNQQEAARIVKTVARTKGKPGQKDLEKMASWLER---GLEKVQQR 73

Query: 60   RRSVPSIRYDDSLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGL 119
                    + + LP++ + D+I+ A+E HQV++IAGETGSGKTTQ+PKIC+  GRG+ GL
Sbjct: 74   HALHKPASFPEGLPVSERVDDIREAIENHQVVIIAGETGSGKTTQIPKICMNSGRGIRGL 133

Query: 120  IGHTQPRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQH 179
            IGHTQPRR+AARSVA R+AEEIG  +G+ +GYQVRF D + + S +K+MTDGILLAE QH
Sbjct: 134  IGHTQPRRIAARSVAARIAEEIGEQIGQQIGYQVRFTDNTSEQSRVKVMTDGILLAEVQH 193

Query: 180  DRFLERYDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHFDGA 239
            DRFL+RYDTII+DEAHERSLNIDFLLG+L+ LLP+RPDLKVIITSATI+++RFSE FD A
Sbjct: 194  DRFLDRYDTIIIDEAHERSLNIDFLLGYLRQLLPKRPDLKVIITSATIEVERFSEFFDKA 253

Query: 240  PIVEVSGRTYPVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSVGKRPGD 299
            P++EVSGRTYPV+  YRPL  + D+      D      G+L ALDEI  HE+S  + PGD
Sbjct: 254  PVIEVSGRTYPVDVRYRPLTGDEDDRDQGWTD------GVLGALDEIEQHERSQKQPPGD 307

Query: 300  VLVFLPGEREIRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATNVAE 359
            +LVFLPGEREIR+ ++VLR  +L+ TEVLPLY+RL+ AEQ ++FQ   GR+IVL+TNVAE
Sbjct: 308  ILVFLPGEREIRNLSKVLRHVDLRHTEVLPLYSRLSNAEQNRVFQSHKGRRIVLSTNVAE 367

Query: 360  TSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLY 419
            TSLTVPGIRYVID+G ARISRYS R+K+QRLP+E +SQASANQR GRCGRV PGIC RLY
Sbjct: 368  TSLTVPGIRYVIDTGVARISRYSVRSKIQRLPVEPISQASANQRAGRCGRVAPGICFRLY 427

Query: 420  SEEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQEL 479
             E DF+ RPE+TDPEILRTNLA+VILQM    LG+I+ FPF+E PD + ++DG+ LL+EL
Sbjct: 428  DETDFINRPEYTDPEILRTNLASVILQMATSGLGEIRQFPFLEAPDKRQVNDGYKLLEEL 487

Query: 480  SAVNRENQLTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADR 539
             AV+ + ++T +GR +ARLP+DPRL RML+ AA+ GSL+E L++ + LS+QD RERP D+
Sbjct: 488  GAVDDKRRVTRLGRTMARLPLDPRLARMLVTAAELGSLSETLVIIAGLSIQDPRERPQDK 547

Query: 540  QQAADQAHAQWKDPDSDFAALINLWRGFEEKRQELGSNPLRTWCRKNFLNYLRLREWRDA 599
            QQAADQAHA + D +SDF  L+N+W  +EE+RQEL  N L+  C+K+FL+++R+REWRD 
Sbjct: 548  QQAADQAHAPFNDKESDFLTLLNVWNFYEEQRQELSQNQLKKVCQKSFLSWMRMREWRDI 607

Query: 600  HRQLTLIARELKLGSGRSADGSGQAAHADKARRVEDGEASSALSAGVSTQPAPTKDTKVN 659
            HRQLTLI RE KL                                      A  KD    
Sbjct: 608  HRQLTLICREQKL--------------------------------------AVNKD---- 625

Query: 660  VILRQQAEASEAAQKAKSYASVHKAILAGLLSQIGNKTEEGDFLGARQRRFWVHPSSVIG 719
                  A + EA  KA         ILAGLL Q+  K E+ ++L  R R+  + P S + 
Sbjct: 626  ------AASYEALHKA---------ILAGLLGQVAVKVEKKEYLATRNRKVLIFPGSKVA 670

Query: 720  RKKPNWLMAAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ 779
            +  P W++A E+VET+++FAR+VA I+P+WIEPLAGH++K ++FEPHWE+KR QV+ YE+
Sbjct: 671  KTGPKWIVATEIVETSRVFARVVASIQPEWIEPLAGHIVKHHYFEPHWEQKRAQVMGYEK 730

Query: 780  VTLYGMIVVGRRPVHYGPIDPPAARELFIREGLVRGEINSRARALSANRELLERLDELEA 839
            VTLYG+ +V +R + Y  +DP   R LFIR  LV G+  S+A  ++ NRE+L+ ++ LE 
Sbjct: 731  VTLYGLDIVAKRRIPYAKVDPAECRNLFIRRALVEGDYRSKAPFIARNREMLDTVENLEK 790

Query: 840  KARRRDILADEETLFDYYDARLPADIYQTASFENWYKRESAKNPQLLIMREEDVLAREAS 899
            K RRRD+L D+E L  +YD RLP+DI     FE W+K   A+  + L + E D+L R   
Sbjct: 791  KTRRRDLLVDDEVLVAFYDERLPSDIISGRHFETWWKGLPAEQLKQLELTESDILQRPVD 850

Query: 900  EVTAAQYPDYLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRSERLDWLVPGLLET 959
               A  YPDYL    ++ PL Y FEP   +DGVTL+VP   L Q+ S RL+WLVPGLL  
Sbjct: 851  AKAADLYPDYLEWEGVRYPLSYEFEPTSEKDGVTLQVPLMALKQIPSRRLEWLVPGLLRE 910

Query: 960  KAVALVRNLPKALRKNFVPVPDFVGAALARIAFGEGSLPEALGRELLRMTGARVSDDAWA 1019
            K +ALV++LPKALR+NFVPVPDFV AAL  +      L   LG +L RMTG ++  DAW 
Sbjct: 911  KCIALVKSLPKALRRNFVPVPDFVDAALENLQPSNEPLTLQLGEQLRRMTGVQIDPDAWT 970

Query: 1020 EAAAGLESHLKMNIEVVDARGKFLGEGRDLAELTARF-AEASQAALAPPQQKAEQKP--- 1075
            ++   L  HL+MN+ V+   G+ + E R+ A+L  +   +A QA  +  Q  A  +P   
Sbjct: 971  DSE--LPKHLRMNLRVMGDGGRAIAESRETADLQHQLEGQAEQALASATQDDAATEPSGE 1028

Query: 1076 VEAKGFAQVAEKAQAKMAGLSMTVYPALVEEAGVVKEGRFPTQAEAEWQHRRALQRLLLQ 1135
                 F  + E+ Q +  G+ +TVYPAL +    V++ R   +  AE   R+A+ RL++ 
Sbjct: 1029 YTEWQFGALPEQVQTEKGGMQVTVYPALEDLGKQVRQIRCLDRLTAEDTTRKAIARLIIN 1088

Query: 1136 QLAEPAKYLRNKLPGLTELGLLYRDMGKVDALVEDILLASLDSCILDGEAQLPRDGAALA 1195
            +       L  KLP   +  L++  +G+   L++D+LLA+     L  E  +PR      
Sbjct: 1089 RFGRTLDDLERKLPRFKQSALMFAPVGQSKVLLDDLLLATAMQHFLTEE--IPRTAEGFD 1146

Query: 1196 SLAERKRGDWTAHAERLARLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYP 1255
             + +  RGD+    E+      + +  +  + K+ KGKI+L  A ++ D+K QL NL+YP
Sbjct: 1147 RVFDAHRGDFIPALEQADERLYQAMSGYQKVAKQLKGKINLVMANSMADLKFQLQNLIYP 1206

Query: 1256 GFVRETPAEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQTRLNKHLQEG 1315
            GF+ ETP EWL E+ RY +A   R EK+  ++ R+R +   +   W +Y  + ++  ++G
Sbjct: 1207 GFLVETPPEWLAEFGRYFEAALVRLEKMPREMGREREFLHTIEPLWSRYAVKRDEQQRQG 1266

Query: 1316 KRDAELALYRWMLEEYRVSLWAQQLGTRMAVSDKRLNKQWSQVE 1359
             RD EL LYRWMLEE+RVS +AQQLGT M VS KRL++QW + +
Sbjct: 1267 VRDPELVLYRWMLEEFRVSFFAQQLGTAMTVSVKRLDRQWEKTK 1310