Pairwise Alignments

Query, 561 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 554 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  276 bits (705), Expect = 2e-78
 Identities = 181/563 (32%), Positives = 300/563 (53%), Gaps = 33/563 (5%)

Query: 4   SLRLRAKLLLLALGPILLLAVVLSGVSVVQLKDLADQQEAQTRASLIRDRRAELKHYVEL 63
           S R+   LLL  +  +L+    L  +  V                L++++ A L    ++
Sbjct: 20  SRRIWVMLLLSLVATLLMFVFALRNMDTV----------------LVQEKEARLNALTDI 63

Query: 64  AKNAIGPIYERSAEGDMQ---ARSQAVAIFERLSYGSEGYFWGYDGQSRRVFQGATRERI 120
           A + I     ++  G++    A+++A++  + L Y  + Y++  D Q   +     ++ +
Sbjct: 64  AISIITDFQGKAQSGELSEADAKAKALSALDNLRYSGKEYYFTIDRQGMMIQHPFAKKLV 123

Query: 121 GESFADYRDPNGVFAIRELVKAGQDS-SHYVDYSFAVPGSNALVPKVGYAEYLPKWNLVF 179
             +     DPNGV    E+++  Q+S S  V+Y +  P ++A  PK+   +   +W  + 
Sbjct: 124 DTNVLGMADPNGVKLFAEMIRLTQNSDSALVNYMWNQPDADAPSPKMSVVKRFSEWGWIV 183

Query: 180 GTSLNLDDVERDVVEARAVFQARIDSLTLIMLGSALLLLILMAGLAVLMSNAILRPLLQI 239
           GT + +DD+     E    F  +   + L++ G  + LL+++       S ++  PL + 
Sbjct: 184 GTGIYVDDIAAQKQE----FTWQYLLVFLLVWGPVMALLLMI-------SRSVTEPLQRT 232

Query: 240 KQNLDDMAQGDGDLTHRLPITSRDELGELSTSFNRFVEKIHALVRQVAGTTTQLSGLVGA 299
                ++A+G+ +LT RL    RDEL ++S  FN FV +I +LV  V  +      L  +
Sbjct: 233 LMAFKNIAEGEANLTLRLEERGRDELSQVSVYFNAFVGRIQSLVISVRDSVDHSRQLSSS 292

Query: 300 VASQAQRSEQAMADQRSETDQVATAINEMSAAAHEVAMSAQRAAEAARETDQQGVAAKQV 359
           +++ A ++  A    + ET  VA AIN+MSA A EVA +AQ AA++A+  D Q  +   V
Sbjct: 293 LSNVAHQAAHATNSMQQETQSVAAAINQMSATASEVAANAQLAAKSAKNADSQADSTNLV 352

Query: 360 VDQSIRQIHELVGELRGSGESLEGLQQDVKGIVGVLDVIRAIAEQTNLLALNAAIEAARA 419
           V  ++  + +L  EL  + E  + L+     I  +LDVI  IAEQTNLLALNAAIEAARA
Sbjct: 353 VTHAMGNVRQLSSELEETSEIAKALKVSSGEIGQILDVIVGIAEQTNLLALNAAIEAARA 412

Query: 420 GEAGRGFAVVADEVRALASRTQQSTGEIQGMIDRLQNATSHTVGTMLRAGEKGESTRNHA 479
           GEAGRGFAVVADEVR LASRTQQST EI  +I+ ++ A      ++ RA ++ ++T +  
Sbjct: 413 GEAGRGFAVVADEVRTLASRTQQSTQEINAIIEAIRGAVDKVNASVARARQQSDNTVDET 472

Query: 480 NQAGESLDAISALIGTINSMNAQIAAAAEEQTAVAEEINRSVHHIAD-AVDGVASDAAQG 538
            Q  ++L  I   IG IN MN QIA A +EQ+AV  E+N +++ I + +V+ ++     G
Sbjct: 473 AQVMDALGLIKQAIGQINDMNLQIATATDEQSAVIAELNENINRINEISVENLSKSETVG 532

Query: 539 AQTARELNGLAEQLQRLVGQFRI 561
             T+  +   + Q+ +L+  F++
Sbjct: 533 -HTSDRIAEDSRQMAQLIAVFKV 554