Pairwise Alignments

Query, 561 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  249 bits (635), Expect = 3e-70
 Identities = 144/404 (35%), Positives = 234/404 (57%), Gaps = 18/404 (4%)

Query: 163 VPKVGYAEYLP-----KWNLVFGTSLNLDDVERDVVEARAVFQARIDSLTLIMLGSALLL 217
           V K+G+++ +P     +W L  G    LD      V  +A+  A + S  +++   ++LL
Sbjct: 241 VDKLGFSKAIPLVNGKQWFLFIG----LDKSNAYAVVDQALTSALVSSAIMLLCAISILL 296

Query: 218 LILMAGLAVLMSNAILRPLLQIKQNLDDMAQGDGDLTHRLPITSRDELGELSTSFNRFVE 277
            +L           + RP+L +K  + ++++G+GDLT RL I   D+LG++S   N+F+ 
Sbjct: 297 GVLYL---------LYRPILSLKAMVTELSKGNGDLTKRLEIHCEDDLGQISMGINQFIA 347

Query: 278 KIHALVRQVAGTTTQLSGLVGAVASQAQRSEQAMADQRSETDQVATAINEMSAAAHEVAM 337
            + A++R+V   +  +SG V  +  + + +   ++    ET+Q+  A+ EMSA A++VA 
Sbjct: 348 NLQAMMREVLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAVEEMSATANDVAQ 407

Query: 338 SAQRAAEAARETDQQGVAAKQVVDQSIRQIHELVGELRGSGESLEGLQQDVKGIVGVLDV 397
           +    A   + T++Q +A+KQVV Q+   ++ LV E+  + + +  + +D   I  VL V
Sbjct: 408 NGSETASFTQLTNEQALASKQVVAQATETVNRLVREVEHTADKIGQIDRDTINITQVLKV 467

Query: 398 IRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALASRTQQSTGEIQGMIDRLQNA 457
           I  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVRALA+RTQ ST EI+  +  L++A
Sbjct: 468 IGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTAEIEETLSNLRDA 527

Query: 458 TSHTVGTMLRAGEKGESTRNHANQAGESLDAISALIGTINSMNAQIAAAAEEQTAVAEEI 517
           ++  + +M    +    T +   +    LDAI + +  IN +N QIA AAEEQ++V+ EI
Sbjct: 528 SNSAIHSMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIATAAEEQSSVSAEI 587

Query: 518 NRSVHHIADAVDGVASDAAQGAQTARELNGLAEQLQRLVGQFRI 561
            R++  I D  + +A            L    +QL+++VGQF++
Sbjct: 588 TRNMSAICDMANELARSGESSRNETVNLATANQQLEQIVGQFKL 631