Pairwise Alignments

Query, 561 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  329 bits (843), Expect = 2e-94
 Identities = 201/561 (35%), Positives = 314/561 (55%), Gaps = 8/561 (1%)

Query: 2   LSSLRLRAKLLLLALGPILLLAVVLSGVSV-VQLKDLADQQEAQTRASLIRDRRAELKHY 60
           +S+  LR KLLLLAL P++L  +VL  VS  V+   LAD+     R  LI +R+ ++K  
Sbjct: 1   MSNFSLRNKLLLLALFPLILTFIVLMTVSYHVEQSALADEVTT-FREKLIGERKTQIKEA 59

Query: 61  VELAKNAIGPIYERSAEGDMQARSQAVAIFERLSYGSEGYFWGYDGQSRRVFQGATRERI 120
            ++A   +        +G++   +QA+     + +GS GYF+ YD Q + +F        
Sbjct: 60  TQIAAGIVQYQLSLKEQGNV---NQAL---RDIRFGSSGYFFLYDSQGKNLFHAVMPNLE 113

Query: 121 GESFADYRDPNGVFAIRELVKAGQDSSHYVDYSFAVPGSNALVPKVGYAEYLPKWNLVFG 180
           G++  D  DP G   I  L+ A ++      + F  P +N  + K+GY+  +P  + + G
Sbjct: 114 GQNKIDMTDPRGTKIIVGLLNAAKNGDGNFSFYFQKPNTNEQIEKIGYSMMIPGTDWMLG 173

Query: 181 TSLNLDDVERDVVEARAVFQARIDSLTLIMLGSALLLLILMAGLAVLMSNAILRPLLQIK 240
           T   +DD++  V + R     ++   +  +L  ALLL  + A + ++ +  ++ P+  + 
Sbjct: 174 TGAYIDDIDAVVEDYRTTVTEQMIDKSYAILLIALLLAAITAPVILVTAQRMVTPIKNMA 233

Query: 241 QNLDDMAQGDGDLTHRLPITSRDELGELSTSFNRFVEKIHALVRQVAGTTTQLSGLVGAV 300
            NL+D+A+G+GDLT RL +   DE+ +L  SFN FV+K+  ++  VA  T ++     A+
Sbjct: 234 DNLNDIAKGEGDLTKRLAVKGDDEIAQLGRSFNLFVDKLQTIIGDVAHATAKVKTAANAI 293

Query: 301 ASQAQRSEQAMADQRSETDQVATAINEMSAAAHEVAMSAQRAAEAARETDQQGVAAKQVV 360
             Q +   + +    +ETDQV TAI EMSA A EVA +  + AEA          A++ V
Sbjct: 294 HDQTKVMSRQLISHNNETDQVVTAITEMSATASEVAQNTTQVAEATHAATGDVANAQRCV 353

Query: 361 DQSIRQIHELVGELRGSGESLEGLQQDVKGIVGVLDVIRAIAEQTNLLALNAAIEAARAG 420
           D S+ +I  L+ ++  +  +++ L +  + I  VL VI  IAEQTNLLALNAAIEAARAG
Sbjct: 354 DASLEEISALMAQINNAASNIQSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAG 413

Query: 421 EAGRGFAVVADEVRALASRTQQSTGEIQGMIDRLQNATSHTVGTMLRAGEKGESTRNHAN 480
           E GRGFAVVADEVR LASRTQ ST EI  M+  L    S  V TM  + +    + + + 
Sbjct: 414 EQGRGFAVVADEVRNLASRTQSSTLEINEMLSELHKLVSLAVKTMEESQQSCIRSVDSSR 473

Query: 481 QAGESLDAISALIGTINSMNAQIAAAAEEQTAVAEEINRSVHHIADAVDGVASDAAQGAQ 540
              ESL ++++ +  IN M+ QIA AA EQ++V EEINR+V  I + V+ +   + + A 
Sbjct: 474 AISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVFAIQEIVNELLHSSEEAAS 533

Query: 541 TARELNGLAEQLQRLVGQFRI 561
            ++ ++     L +LVGQF+I
Sbjct: 534 VSQTVSQEGLNLGKLVGQFKI 554