Pairwise Alignments

Query, 561 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  269 bits (687), Expect = 2e-76
 Identities = 168/484 (34%), Positives = 265/484 (54%), Gaps = 12/484 (2%)

Query: 79  DMQARSQAVAIFERLSYGSEGYFWGYDGQSRRVFQGATRERIGESFADYRDPNGVFAIRE 138
           + +A+  A  + ++  Y   GYF   D  ++ +  G   + IG S  +++  NG   +  
Sbjct: 73  EAEAQQAAANLIDQTRYAGVGYFIVIDDNNQILAHGERSDLIGTSALNFKLQNGTNPLAT 132

Query: 139 LVK-AGQDSSHYVDYSFAVPGSNALVPKVGYAEYLPKWNLVFGTSLNLDDVERDVVEARA 197
           ++  A Q+    ++Y  A P S  +  K+  A Y P+W     T   L DV++ +   +A
Sbjct: 133 MLPLARQNGKTMLEYPIANPVSKNIEDKLVEARYYPEWGWTLITGAYLSDVKQSL---KA 189

Query: 198 VFQARIDSLTLIMLGSALLLLILMAGLAVLMSNAILRPLLQIKQNLDDMAQGDGDLTHRL 257
           V    ID L ++ L S  +    +     +++++I  PL      L+D+AQG+GDL+ RL
Sbjct: 190 VI---IDYLIIMFLISVPIFAFFL-----VLNHSITSPLNDAIDALEDIAQGEGDLSQRL 241

Query: 258 PITSRDELGELSTSFNRFVEKIHALVRQVAGTTTQLSGLVGAVASQAQRSEQAMADQRSE 317
               +DE+  L+ +FN F +KI  +V  +      L      +    + S Q+      E
Sbjct: 242 STQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKQLMLAVEESNQSAEHIHRE 301

Query: 318 TDQVATAINEMSAAAHEVAMSAQRAAEAARETDQQGVAAKQVVDQSIRQIHELVGELRGS 377
           T  VATA+N+M +  HE+A + Q+AA+AA     Q   ++ V+D ++R   +LV ELR S
Sbjct: 302 TGSVATAVNQMLSTTHEMASNTQQAADAANSVKNQAQQSQAVIDDTVRDTEKLVQELRAS 361

Query: 378 GESLEGLQQDVKGIVGVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALA 437
               + L Q    I  +LDVIR+IAEQTNLLALNAAIEAARAG  GRGFAVVADEVRALA
Sbjct: 362 EVITQKLGQSSAQIGSILDVIRSIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALA 421

Query: 438 SRTQQSTGEIQGMIDRLQNATSHTVGTMLRAGEKGESTRNHANQAGESLDAISALIGTIN 497
           +RTQ ST EIQ +I  +Q   +  + +  +   + +  +  A +AG ++ AI  LI  I+
Sbjct: 422 NRTQDSTNEIQKIISDIQMGVNSVMKSNSQTQTQSDELQAKAREAGNAMAAILQLIAHIS 481

Query: 498 SMNAQIAAAAEEQTAVAEEINRSVHHIADAVDGVASDAAQGAQTARELNGLAEQLQRLVG 557
            MN Q+A+A EEQ+ V EEINR++ +I++  +         ++ A+ L  +++ +   +G
Sbjct: 482 DMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANEGNSRAAQSLQDISQDMSHTLG 541

Query: 558 QFRI 561
           QF+I
Sbjct: 542 QFKI 545