Pairwise Alignments

Query, 563 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) from Pseudomonas stutzeri RCH2

Subject, 561 a.a., long-chain-fatty-acid--CoA ligase FadD from Escherichia coli Nissle 1917

 Score =  617 bits (1592), Expect = 0.0
 Identities = 301/558 (53%), Positives = 407/558 (72%), Gaps = 3/558 (0%)

Query: 6   WKDKYPVGVSSEINPDEYQNIQAVLKQSCERFADKPAFSNLGKTLTYGELYKLSGDFAAY 65
           W ++YP  V +EINPD YQ++  + +QS  R+AD+PAF N+G+ +T+ +L + S  FAAY
Sbjct: 5   WLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVNMGEVMTFRKLEERSRAFAAY 64

Query: 66  LQQNTDLQPGDRIAVQLPNLIQYPIVVFGAMRAGLIVVNTNPLYTAREMEHQFNDAGAKA 125
           LQQ   L+ GDR+A+ +PNL+QYP+ +FG +RAG+IVVN NPLYT RE+EHQ ND+GA A
Sbjct: 65  LQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGASA 124

Query: 126 LVCLANMAHLAEEVLPKTGIKHVVITEVADMLPPLKRMLVNAVVKHVKKMVPAYSLPKAV 185
           +V ++N AH  E+V+ KT ++HV++T + D L   K  +VN VVK++K++VP Y LP A+
Sbjct: 125 IVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAI 184

Query: 186 KLNDALALGRGKPVREALPKSDDVAVLQYTGGTTGVAKGAMLTHRNIVANMLQCKALMGS 245
               AL  G      +     +D+A LQYTGGTTGVAKGAMLTHRN++AN+ Q  A  G 
Sbjct: 185 SFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGP 244

Query: 246 NLNDGSEVLIAPLPLYHIYAFTFHCMAMMLSGNHNILISNPRDLPAMIKDLGKYRFSGFV 305
            L+ G E+++  LPLYHI+A T +C+  +  G  N+LI+NPRD+P ++K+L KY F+   
Sbjct: 245 LLHPGKELVVTALPLYHIFALTINCLLFIELGGQNLLITNPRDIPGLVKELAKYPFTAIT 304

Query: 306 GLNTLFVALCNSEDFRKLDFSALKVTLSGGMALQLATAERWKQVTGCPICEGYGLTETSP 365
           G+NTLF AL N+++F++LDFS+L ++  GGM +Q   AERW ++TG  + EGYGLTE +P
Sbjct: 305 GVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAP 364

Query: 366 VASVNPIE-HIQLGSIGIPVPSTQFKVINDDGQDLAQGEIGELCIKGPQVMKGYWQRPEA 424
           + SVNP +     GSIG+PVPST+ K+++DD  ++  G+ GELC+KGPQVM GYWQRP+A
Sbjct: 365 LVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDA 424

Query: 425 TDEVIDAQGWFKTGDIGVIQEDGYIRIVDRKKDMILVSGFNVYPNELEDVLASLPGVLQS 484
           TDE+I   GW  TGDI V+ E+G++RIVDRKKDMILVSGFNVYPNE+EDV+   PGV + 
Sbjct: 425 TDEII-KNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEV 483

Query: 485 AAIGVPDEKSGEAIKLFVVVKPGESLTKEQVMQHMHDNLTGYKRPKAVEFRDSLPTTNVG 544
           AA+GVP   SGEA+K+F VVK   SLT+E ++      LTGYK PK VEFRD LP +NVG
Sbjct: 484 AAVGVPSGSSGEAVKIF-VVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVG 542

Query: 545 KILRRELRDEELRKLGHK 562
           KILRRELRDE   K+ +K
Sbjct: 543 KILRRELRDEARGKVDNK 560