Pairwise Alignments

Query, 949 a.a., Superfamily II DNA/RNA helicases, SNF2 family from Pseudomonas stutzeri RCH2

Subject, 948 a.a., RNA polymerase associated protein RapA (EC 3.6.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score = 1637 bits (4238), Expect = 0.0
 Identities = 813/949 (85%), Positives = 878/949 (92%), Gaps = 1/949 (0%)

Query: 1   MAQQYLPGQRWISDSEAELGLGTILTQDGRMLTVLYPATGETRQYATRSAPLTRVRFVPG 60
           MAQQY PGQRWISDSEAELGLGT+L QDGR+LTVLYPATG+TRQYA R+APLTRVRF PG
Sbjct: 1   MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPG 60

Query: 61  DEITHFEGWKMTVREVDDVDGLLVYHGLTAQNEARTLPETQLSNFIQFRLASDRLFAGQI 120
           D ITHFEGWKMTVREVDD+DGLLVYHGL  QNE  TLPETQLSNFIQFRLASDRLFAGQI
Sbjct: 61  DVITHFEGWKMTVREVDDIDGLLVYHGLNGQNEVVTLPETQLSNFIQFRLASDRLFAGQI 120

Query: 121 DPLAWFSLRYHTLQHQSAQLQSSLWGLGGVRAQPIAHQLHIAKEVADRIAPRVLLADEVG 180
           DPLAWFSLRYHTL+H S QLQSSLWGLGGVRAQPIAHQLHIA+EVADRIAPRVLLADEVG
Sbjct: 121 DPLAWFSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG 180

Query: 181 LGKTIEAGLIIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLEVALFDAERFIESDA 240
           LGKTIEAGL+IHRQLLSGRA+RVLILVPENLQHQWLVEMRRRFNL+VALFD ERFIESDA
Sbjct: 181 LGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA 240

Query: 241 SNPFEDTQLALVSLEWLKEDERAQDAAFAAGWDVLVVDEAHHLVWHPEGASAEYKLVEQL 300
           SNPFEDTQLALV+LEWL +DE+AQDA FAAGWD++VVDEAHHLVWH +  S +Y LVEQL
Sbjct: 241 SNPFEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDQVSPQYALVEQL 300

Query: 301 AEVIPGVLLLTATPEQLGLDSHFARLRLLDPNRFHDLEAFRAESSSYQPVAEAVQELLDE 360
           AE IPGVLLLTATPEQLG DSHFARLRLLDPNRFHDL+AFRAES +Y+PVAEAVQELLD+
Sbjct: 301 AETIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLKAFRAESENYRPVAEAVQELLDK 360

Query: 361 GRLSQQAHQTIHDFLGAEGEALLAAATDGDIEASSRLIRELLDRHGTGRLLFRNTRAAVQ 420
           GRLS +AH+TI  FLG EGEALL A +DGD+EAS+RL+RELLDRHGTGR+LFRNTRAAVQ
Sbjct: 361 GRLSPEAHKTIQGFLGNEGEALLTAVSDGDVEASARLVRELLDRHGTGRVLFRNTRAAVQ 420

Query: 421 GFPERQLHPYPLPCPAEYLELPLGEHAELYPEVAFQSQQDDGEASNRWWQFDPRVEWLID 480
           GFPER+LH YPLPCPAEYLELPLG+H ELYPEV+FQ+Q D  E   RWW+FDPRVEWLID
Sbjct: 421 GFPERKLHAYPLPCPAEYLELPLGDHPELYPEVSFQAQPDASE-EERWWRFDPRVEWLID 479

Query: 481 TLKMLKKFKVLVICAHAETALDLEDALRVRSGIPATVFHEGMSILERDRAAAYFADEDFG 540
           TLKMLK+ KVLVICAHAETA+DLEDALRVRSGIPATVFHEGM+ILERDRAAAYFADE+FG
Sbjct: 480 TLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFG 539

Query: 541 AQVLICSEIGSEGRNFQFSHHLVLFDLPAHPDLLEQRIGRLDRIGQQHTIQLHVPYLETS 600
           AQVLICSEIGSEGRNFQF+HHLVLFDLPAHPDLLEQRIGRLDRIGQ+HTI+LH PYLETS
Sbjct: 540 AQVLICSEIGSEGRNFQFAHHLVLFDLPAHPDLLEQRIGRLDRIGQKHTIELHAPYLETS 599

Query: 601 PQERLFTWYHQALNAFLNTCPTGNALQHRFGPQLLAQLEEGDDDAYQLLIDEARAERERL 660
           PQ RLF WYH+ALNAFLNTCPTGNALQH+FGP+LL  LEE DD  +Q LIDEAR ERERL
Sbjct: 600 PQARLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEADDGQWQALIDEARTERERL 659

Query: 661 EAELHSGRDRLLELNSGGGEQGKALVEAIEEQDDQFALPIYMEQLFDAFGIDSEDHSENA 720
           EAELH+GRDRLLELNSGG  +G ALVEAI EQDDQFALPIYME LFDAFGIDSEDHSENA
Sbjct: 660 EAELHTGRDRLLELNSGGAGEGDALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENA 719

Query: 721 LVLRPSEKMLDASFPLGDDEAVTITYDREQALAREDMQFLTWEHPMVQGGMDLVLSGSMG 780
           L+L+PSEKMLDASFPLGDDE VTITYDR QAL+REDMQF+TWEHPMVQGGMDLVLSGSMG
Sbjct: 720 LILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMG 779

Query: 781 NTAVALIKNKALKPGTVLLELLFVSEVVAPRALQLSRFLPPLALRCLLDGNGNDLASKVA 840
           NTAVALIKNKALKPGTVLLELL+VSEVVAPR+LQL R+LPP ALRCLLD NGNDLA++V+
Sbjct: 780 NTAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLAARVS 839

Query: 841 FDTLNDQLESVPRASANKFVQAQRDVLAMQIAAAEAKIAPRHTERVAEAKRKLKAGLDEE 900
           F+TLNDQLESVPRASANKF+QAQRD L  +I A E KI PRH ERVAEA+R+L A  DEE
Sbjct: 840 FETLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKITPRHAERVAEAQRRLAADTDEE 899

Query: 901 LARLVALQAVNPSVRDSEIEALRQQREEGLAALDKAALRLEAIRVLVAG 949
           LARL ALQAVNP+VRDSE+ ALRQQRE+GLA L+KAALRLEAIRVLVAG
Sbjct: 900 LARLTALQAVNPTVRDSELVALRQQREQGLAMLEKAALRLEAIRVLVAG 948