Pairwise Alignments

Query, 949 a.a., Superfamily II DNA/RNA helicases, SNF2 family from Pseudomonas stutzeri RCH2

Subject, 968 a.a., ATP-dependent helicase HepA (RefSeq) from Shewanella loihica PV-4

 Score =  892 bits (2304), Expect = 0.0
 Identities = 480/965 (49%), Positives = 647/965 (67%), Gaps = 31/965 (3%)

Query: 8   GQRWISDSEAELGLGTILTQDGRMLTVLYPATGETRQYATRSAPLTRVRFVPGDEITHFE 67
           GQRWISD+E+ELGLGT++  +GRM+T+++PAT E R +A   APLTRV + PGD I   E
Sbjct: 6   GQRWISDTESELGLGTVIGLEGRMVTLMFPATDENRMFARDDAPLTRVIYNPGDIIESHE 65

Query: 68  GWKMTVREVDDVDGLLVYHGL-TAQNEARTLPETQLSNFIQFRLASDRLFAGQIDPLAWF 126
           GW + V E+++ + L++YHG+ T   E  +L ET L++ I+F    DRLFAGQID L  F
Sbjct: 66  GWSLKVSEIEEKNQLVIYHGIHTETGEEVSLRETLLNHNIRFNKPQDRLFAGQIDRLDRF 125

Query: 127 SLRYHT--LQHQSAQLQSSLWGLGGVRAQPIAHQLHIAKEVADRIAPRVLLADEVGLGKT 184
            +RY +  L+H+ A   S L GL G R   I HQ  IA EV  R APRVLLADEVGLGKT
Sbjct: 126 GVRYQSQLLRHKLAT--SDLLGLQGPRVGLIPHQQWIAHEVGQRFAPRVLLADEVGLGKT 183

Query: 185 IEAGLIIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLEVALFDAERFIES--DASN 242
           IEAGLIIH+QLL+GRA R+LI+VP+ L+HQWLVEM RRFNL  ++FD +R +E+  D  N
Sbjct: 184 IEAGLIIHQQLLTGRAERILIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAYADHDN 243

Query: 243 PFEDTQLALVSLEWLKEDERAQDAAFAAGWDVLVVDEAHHLVWHPEGASAEYKLVEQLAE 302
           PF   QL + SLE L++ +R  D A  A WD++VVDEAHHL W  E  S  Y++VE L+E
Sbjct: 244 PFYTEQLVICSLELLRKKKRL-DQALDADWDLMVVDEAHHLEWTEEEPSRAYRVVEALSE 302

Query: 303 VIPGVLLLTATPEQLGLDSHFARLRLLDPNRFHDLEAFRAESSSYQPVAEAVQELLDEGR 362
           V+PGVLLLTATP+QLG  SHFARLRLLDP+RF+D +AF  E  SY+ VA A   L    R
Sbjct: 303 VVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYQAFLKEEESYKEVASAADALASGKR 362

Query: 363 LSQQAHQTIHDFLGAEG-EALLAAATDGDIE------ASSRLIRELLDRHGTGRLLFRNT 415
           L  +A  ++ + L  +     L    D  ++      A S L++ELLDRHGTGR+L+RN+
Sbjct: 363 LPDEAVASLTELLNEKDITPALRLIEDESVDNEQRDQARSELLQELLDRHGTGRVLYRNS 422

Query: 416 RAAVQGFPERQLHPYPLPCPAEY-------------LELPLGEHAELYPEVAFQSQQDDG 462
           RA+V+GFP R  + +P   PA+Y              +L       L PE  +Q+ + D 
Sbjct: 423 RASVKGFPTRIFNAHPQTMPAQYKTAARVSDMMGGQTDLTAKVKQALSPEKLYQAFESD- 481

Query: 463 EASNRWWQFDPRVEWLIDTLKMLKKFKVLVICAHAETALDLEDALRVRSGIPATVFHEGM 522
             S  WW+FDPRV+WLID LK  +  KVL+I + AETAL LE+ALR R GI ATVFHEGM
Sbjct: 482 --SASWWKFDPRVDWLIDFLKNHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGM 539

Query: 523 SILERDRAAAYFADEDFGAQVLICSEIGSEGRNFQFSHHLVLFDLPAHPDLLEQRIGRLD 582
           SI+ERD+A AYFA E  GAQ LICSEIGSEGRNFQF+ HLVLFDLP +PDLLEQRIGRLD
Sbjct: 540 SIIERDKAGAYFAQESGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLD 599

Query: 583 RIGQQHTIQLHVPYLETSPQERLFTWYHQALNAFLNTCPTGNALQHRFGPQLLAQLEEGD 642
           RIGQ + +++H+PYL  + QE L  WYH+ LNAF  TCPTG+ L + F  +LL QL   D
Sbjct: 600 RIGQANDVEIHLPYLANTAQENLMNWYHKGLNAFEQTCPTGHILFNEFSEELLTQLVYRD 659

Query: 643 DDAYQLLIDEARAERERLEAELHSGRDRLLELNSGGGEQGKALVEAIEEQDDQFALPIYM 702
           +D +  L++  ++  + L+  +  GRD+LLE+NS GG++ + LVE +  +D    L   +
Sbjct: 660 EDKFTQLLNHTQSRYKALKKAMEQGRDKLLEINSHGGDKAQKLVENLAARDQDTQLIGSV 719

Query: 703 EQLFDAFGIDSEDHSENALVLRPSEKMLDASFPLGDDEAVTITYDREQALAREDMQFLTW 762
            +L+D  G++ ED  ENA+VL PSE M+  ++P   ++ +T+T+DRE AL+R+D+  +T 
Sbjct: 720 IRLWDIIGVEQEDSGENAIVLHPSEHMMFPTYPGLPEDGITVTFDREMALSRDDIALITQ 779

Query: 763 EHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLFVSEVVAPRALQLSRFLPPL 822
           EHP+VQ G+DL+ S   G T+VA++KNKAL  GT+ LEL+++++  APR+ QL R++PP 
Sbjct: 780 EHPLVQTGLDLITSSETGTTSVAVLKNKALPAGTIFLELIYMADASAPRSSQLYRYMPPT 839

Query: 823 ALRCLLDGNGNDLASKVAFDTLNDQLESVPRASANKFVQAQRDVLAMQIAAAEAKIAPRH 882
            +R LLD NGN+L+  V++++ + QL +V R  A+K V A + +L    A  E       
Sbjct: 840 PVRVLLDKNGNNLSQNVSYESFDKQLSAVNRHIASKLVNASQTLLHPLFAKGEEFAQAAM 899

Query: 883 TERVAEAKRKLKAGLDEELARLVALQAVNPSVRDSEIEALRQQREEGLAALDKAALRLEA 942
            +   EA  K+   L  EL RL AL+AVNP++RD E+E LR Q  E    LD   L+L+A
Sbjct: 900 KQLTEEASNKMTQQLTAELERLEALKAVNPNIRDEELEHLRNQMVELGNYLDACQLQLDA 959

Query: 943 IRVLV 947
           +R+++
Sbjct: 960 VRLVL 964