Pairwise Alignments

Query, 949 a.a., Superfamily II DNA/RNA helicases, SNF2 family from Pseudomonas stutzeri RCH2

Subject, 968 a.a., ATP-dependent helicase HepA (RefSeq) from Shewanella sp. ANA-3

 Score =  921 bits (2381), Expect = 0.0
 Identities = 495/965 (51%), Positives = 664/965 (68%), Gaps = 31/965 (3%)

Query: 8   GQRWISDSEAELGLGTILTQDGRMLTVLYPATGETRQYATRSAPLTRVRFVPGDEITHFE 67
           GQRWISD+E+ELGLGT++  +GRM+TVL+PATGE R ++   APLTRV + PGD +   E
Sbjct: 6   GQRWISDTESELGLGTVVQVEGRMVTVLFPATGENRMFSRNEAPLTRVIYNPGDTVESHE 65

Query: 68  GWKMTVREVDDVDGLLVYHGLTAQN-EARTLPETQLSNFIQFRLASDRLFAGQIDPLAWF 126
           GW ++V E+ + DGL+VYHG+ ++  E  +L ET L++ I+F    DRLFAGQID L  F
Sbjct: 66  GWSLSVEELTEKDGLVVYHGIHSETGEKVSLRETLLNHNIRFNKPQDRLFAGQIDRLDRF 125

Query: 127 SLRYHT--LQHQSAQLQSSLWGLGGVRAQPIAHQLHIAKEVADRIAPRVLLADEVGLGKT 184
            +RY    L+HQ A   S L GL G R   I HQ+ IA EV  R APRVLLADEVGLGKT
Sbjct: 126 GIRYQCQLLRHQLAT--SDLLGLQGPRVGLIPHQMWIAHEVGRRYAPRVLLADEVGLGKT 183

Query: 185 IEAGLIIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLEVALFDAERFIES--DASN 242
           IEAGLIIH+QLL+GRA RVLI+VP+ L+HQWLVEM RRFNL  ++FD +R +E+  D  N
Sbjct: 184 IEAGLIIHQQLLTGRAERVLIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAFADHDN 243

Query: 243 PFEDTQLALVSLEWLKEDERAQDAAFAAGWDVLVVDEAHHLVWHPEGASAEYKLVEQLAE 302
           PF   QL + SLE L++ +R  D A  A WD+LVVDEAHHL W  E  S  Y++VE L+E
Sbjct: 244 PFYTEQLVICSLELLRKKKRL-DQALDADWDLLVVDEAHHLEWTEEAPSRAYQVVEALSE 302

Query: 303 VIPGVLLLTATPEQLGLDSHFARLRLLDPNRFHDLEAFRAESSSYQPVAEAVQELLDEGR 362
           V+PGVLLLTATP+QLG +SHFARLRLLDP+RF+D +AF AE +SY+ VA A + L  + +
Sbjct: 303 VVPGVLLLTATPDQLGHESHFARLRLLDPDRFYDYDAFLAEENSYKDVAVAAEALAGDAK 362

Query: 363 LSQQAHQTIHDFLGAEGEA---LLAAATDGDIE----ASSRLIRELLDRHGTGRLLFRNT 415
           LS  A  ++ + L  +  A    L  A D D E    A S L++ELLDRHGTGR+L+RN+
Sbjct: 363 LSDAAINSLTELLSEKDIAPSIRLIQAEDIDSELQQAARSELLQELLDRHGTGRVLYRNS 422

Query: 416 RAAVQGFPERQLHPYPLPCPAEYL-------------ELPLGEHAELYPEVAFQSQQDDG 462
           RA+V+GFP+R  + YP   P +YL              L       L PE  +Q  +D+ 
Sbjct: 423 RASVKGFPKRIFNAYPHAMPEQYLTAARVNEMMGGRKSLEAQAAQALSPEKLYQEFEDN- 481

Query: 463 EASNRWWQFDPRVEWLIDTLKMLKKFKVLVICAHAETALDLEDALRVRSGIPATVFHEGM 522
             S  WW+FDPRV+WLI+ LK  +  KVL+I + A+TAL LE+ALR R GI ATVFHEGM
Sbjct: 482 --SASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGM 539

Query: 523 SILERDRAAAYFADEDFGAQVLICSEIGSEGRNFQFSHHLVLFDLPAHPDLLEQRIGRLD 582
           SI+ERD+A AYFA E+ GAQ LICSEIGSEGRNFQF+ HLVLFDLP +PDLLEQRIGRLD
Sbjct: 540 SIIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLD 599

Query: 583 RIGQQHTIQLHVPYLETSPQERLFTWYHQALNAFLNTCPTGNALQHRFGPQLLAQLEEGD 642
           RIGQ++ IQ+H+PYL+ + QERL  WYHQ LNAF  TCP+G+ L   F   LL  L  GD
Sbjct: 600 RIGQKNDIQIHLPYLQDTAQERLLNWYHQGLNAFELTCPSGHVLYSEFAEDLLNVLVGGD 659

Query: 643 DDAYQLLIDEARAERERLEAELHSGRDRLLELNSGGGEQGKALVEAIEEQDDQFALPIYM 702
           +D    L++  ++  + L+  +  GRD+LLE+NS GG++ KA+VE + + D    L   +
Sbjct: 660 EDELTNLLNHTQSRYKELKHAMEQGRDKLLEINSHGGDKAKAIVERLAQSDQDTKLIGSV 719

Query: 703 EQLFDAFGIDSEDHSENALVLRPSEKMLDASFPLGDDEAVTITYDREQALAREDMQFLTW 762
            +L+D  G+D ED  EN+++LRPSE M+  ++P   ++ VT+T+DR+ AL+R+D+  +T 
Sbjct: 720 IRLWDIIGVDQEDKGENSIILRPSEHMMFPTYPGLHEDGVTVTFDRDTALSRDDIALITQ 779

Query: 763 EHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLFVSEVVAPRALQLSRFLPPL 822
           EHP+VQ G+DL+     G T+VA++KNKAL  GT+ LEL+++++  AP++ QL R+LPP 
Sbjct: 780 EHPLVQTGLDLITGSDTGTTSVAILKNKALPAGTLFLELIYMADASAPKSSQLYRYLPPT 839

Query: 823 ALRCLLDGNGNDLASKVAFDTLNDQLESVPRASANKFVQAQRDVLAMQIAAAEAKIAPRH 882
            +R LLD NGNDL++KV + + + QL +V R   +K V A + +L    A  E       
Sbjct: 840 PIRVLLDKNGNDLSAKVDYTSFDKQLSAVNRHIGSKLVTASQPILHPLFAKGEEYAQTAV 899

Query: 883 TERVAEAKRKLKAGLDEELARLVALQAVNPSVRDSEIEALRQQREEGLAALDKAALRLEA 942
            E VA+A+ K+ + L  EL RL +L+AVNP++R+ E+E LR Q +E    LD + L+L+A
Sbjct: 900 NELVAQAREKMTSQLTGELDRLESLKAVNPNIREEELEYLRNQMQELSTYLDASQLQLDA 959

Query: 943 IRVLV 947
           IR+++
Sbjct: 960 IRMVL 964