Pairwise Alignments

Query, 671 a.a., excinuclease ABC, B subunit from Pseudomonas stutzeri RCH2

Subject, 671 a.a., Excinuclease ABC subunit B from Pseudomonas fluorescens FW300-N1B4

 Score = 1178 bits (3047), Expect = 0.0
 Identities = 601/671 (89%), Positives = 634/671 (94%)

Query: 1   MSKFELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTL 60
           MS+F+LVTRF+PAGDQPEAIR M+EGIEAGL+HQTLLGVTGSGKTFSIANVIA +QRPTL
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQIQRPTL 60

Query: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120
           VLAPNKTLAAQLYGEFK FFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
Sbjct: 61  VLAPNKTLAAQLYGEFKTFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 121 MRLSATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQY 180
           MRLSATKALLER DAIIVTTVSCIYGLG P++YLKMVLHVDRGD+LDQR LLRRL  LQY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRF 240
           TRNDMDFARATFRVRGDVIDI PAESD EA+RIELFDDEVESLSAFDPLTGEVIRKLPRF
Sbjct: 181 TRNDMDFARATFRVRGDVIDIHPAESDFEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 241 TFYPKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELG 300
           TFYPKSHYVTPRETLL+A E IK EL+ERL+YLRS NKLVEAQRLEQRTRFDLEMI+ELG
Sbjct: 241 TFYPKSHYVTPRETLLEATEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 301 YCNGIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360
           YCNGIENYSRYLSGR++G+ PPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL
Sbjct: 301 YCNGIENYSRYLSGRESGQAPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 361 VEYGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDPQ 420
           VEYGFRLPSALDNRPMRFDE+E+I PQTIFVSATPG YEAEHAGRVVEQ+VRPTGLVDPQ
Sbjct: 361 VEYGFRLPSALDNRPMRFDEFESISPQTIFVSATPGNYEAEHAGRVVEQLVRPTGLVDPQ 420

Query: 421 IEVRPALTQVDDLLSEIRKCVVKEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSDIDT 480
           IE+RPALTQVDDLLSEI K V  EERVLVTTLTKRM+EDLTDYL+DH VRVRYLHSDIDT
Sbjct: 421 IEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDT 480

Query: 481 VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540
           VERVEIIRDLRLG FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
Sbjct: 481 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540

Query: 541 ARNLNGRAILYADNVTGSMQRAMDETERRRNKQIAFNEANGIVPKGVTKDVRDILEGATV 600
           ARNLNGRAILYAD +TGSM+RA+ ETERRR+KQIAFN ANGI PKGV KDV DI+EGA V
Sbjct: 541 ARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGAVV 600

Query: 601 PGSRSKKRRGEAKAAEESARYENELRSPSEITKRIRQLEEKMLSLARDLEFEAAAEARDE 660
           PGSRSKKR+G AKAAEESA+YE ELRSPSEI+KRIRQLEEKM  LARDLEFEAAA+ RDE
Sbjct: 601 PGSRSKKRKGMAKAAEESAKYEAELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRDE 660

Query: 661 IHKLRERLLQV 671
           I KLRERL+ V
Sbjct: 661 IGKLRERLIVV 671