Pairwise Alignments

Query, 671 a.a., excinuclease ABC, B subunit from Pseudomonas stutzeri RCH2

Subject, 669 a.a., excinuclease ABC subunit UvrB from Synechocystis sp000284455 PCC 6803

 Score =  734 bits (1894), Expect = 0.0
 Identities = 379/669 (56%), Positives = 491/669 (73%), Gaps = 12/669 (1%)

Query: 4   FELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLVLA 63
           F L   F+P GDQP AI  +IE ++     QTLLG TG+GKTF++A+VIA + RPTLVLA
Sbjct: 6   FSLHAPFRPTGDQPTAIASLIESLQGEHKFQTLLGATGTGKTFTMASVIAELGRPTLVLA 65

Query: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123
            NKTLAAQL  E + FFP NAVEYF+SYYDYYQPEAY+P +DT+IEK ASIND I+ +R 
Sbjct: 66  HNKTLAAQLCNELRQFFPENAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLRH 125

Query: 124 SATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYTRN 183
           SAT++L ER D I+V ++SCIYGLG P  YLK  + +  G   D R ++R L  +QY+RN
Sbjct: 126 SATRSLFERRDVIVVASISCIYGLGIPSQYLKAAVPLQVGAEYDPRLVIRDLVNVQYSRN 185

Query: 184 DMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243
           D++  R  FR++GDV++I PA  D   +RIE F DEVE+L   DP++GE+++ L R + Y
Sbjct: 186 DVELQRGRFRLKGDVLEIVPAYED-RVIRIEFFGDEVEALRLIDPVSGEILQSLDRISIY 244

Query: 244 PKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELGYCN 303
           P  H+VTP ETL  A ++I+ E+ +++ +L   N LVEAQRL QRTR+DLEM+ E+GYCN
Sbjct: 245 PARHFVTPEETLEKACQQIQTEMEQQVAFLEKNNLLVEAQRLSQRTRYDLEMLREVGYCN 304

Query: 304 GIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363
           G+ENYSRYL+ R AGEPP  L DY P D LLVIDESHV++PQ+  MY GD++RK+ L+++
Sbjct: 305 GVENYSRYLADRQAGEPPECLVDYFPEDWLLVIDESHVTIPQLRGMYNGDQARKKVLIDH 364

Query: 364 GFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQIE 422
           GFRLPSA DNRP++ +E+     Q +FVSATPG +E E +  RV+EQV+RPTG++DP+I 
Sbjct: 365 GFRLPSAADNRPLKAEEFWQKVKQCVFVSATPGVWEIEQSEARVIEQVIRPTGVLDPEIF 424

Query: 423 VRPALTQVDDLLSEIRKCVVKEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSDIDTVE 482
           VRP   QVDDL  EI+  V  +ERVL+TTLTKRMAEDLTDY S+  ++V+YLHS+I +++
Sbjct: 425 VRPTTGQVDDLYGEIQTRVKLKERVLITTLTKRMAEDLTDYFSERGIKVQYLHSEIQSIQ 484

Query: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542
           R+EI++ LR G FDVL+G+NLLREGLD+PEVSLVAI+DADKEGFLR+ERSLIQTIGRAAR
Sbjct: 485 RIEILQALRDGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRAAR 544

Query: 543 NLNGRAILYADNVTGSMQRAMDETERRRNKQIAFNEANGIVPKGVTKDVRD-ILEGATVP 601
           ++ G+AILYADN T SMQ+A+ ETERRR  Q  +NE +GI P+ + K   + IL+   + 
Sbjct: 545 HIRGQAILYADNFTDSMQKAIAETERRRKIQQEYNEKHGITPQPINKRANNAILQFLDI- 603

Query: 602 GSRSKKRRGEAKAAEESARYENELRSPSE-ITKRIRQLEEKMLSLARDLEFEAAAEARDE 660
                 RR  ++  EE   YE     P E I   I+QLEEKM   A+  EFE AA  RD 
Sbjct: 604 -----SRRLNSQQLEEV--YEQAQDLPLEKIPDLIQQLEEKMQEAAKKQEFEVAAIYRDR 656

Query: 661 IHKLRERLL 669
           I  LR+RLL
Sbjct: 657 IQHLRDRLL 665