Pairwise Alignments

Query, 671 a.a., excinuclease ABC, B subunit from Pseudomonas stutzeri RCH2

Subject, 672 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella amazonensis SB2B

 Score =  924 bits (2388), Expect = 0.0
 Identities = 463/670 (69%), Positives = 556/670 (82%), Gaps = 7/670 (1%)

Query: 4   FELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLVLA 63
           F+L + + PAGDQP AI ++I+G+E+GL+ QTLLGVTGSGKTF++ANVIA + RPT+++A
Sbjct: 6   FQLSSHYSPAGDQPTAIAKLIDGLESGLACQTLLGVTGSGKTFTVANVIATLGRPTIIMA 65

Query: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123
           PNKTLAAQLYGE K FFPNNAVEYFVSYYDYYQPEAYVP+S+TFIEKDAS+N HIEQMRL
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125

Query: 124 SATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYTRN 183
           SATKALLER D IIV +VS IYGLGDP SY+KM+LH+ +GD + QR++LRRL+ LQY+RN
Sbjct: 126 SATKALLERRDVIIVASVSAIYGLGDPDSYMKMLLHLRQGDFMGQRDILRRLSELQYSRN 185

Query: 184 DMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243
           D+D  R TFRVRG+VIDIFPA+S+ +A+R+ELFDDE+E +S FDPLTG+V ++L R T Y
Sbjct: 186 DIDLQRGTFRVRGEVIDIFPADSERDAIRVELFDDEIERISEFDPLTGQVTKRLARATVY 245

Query: 244 PKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELGYCN 303
           PK+HYVTPRE +L+AI++IKDELR R       +KL+EAQR+ +R ++D+EM+ ELGYC+
Sbjct: 246 PKTHYVTPREKILEAIDQIKDELRVRKQQFLDNHKLIEAQRITERVQYDVEMMTELGYCS 305

Query: 304 GIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363
           GIENYSRYLSGR  GE PPTL DYLPAD L++IDESH +VPQ+GAMYKGDRSRK TLVEY
Sbjct: 306 GIENYSRYLSGRAEGEGPPTLLDYLPADGLMIIDESHNTVPQIGAMYKGDRSRKTTLVEY 365

Query: 364 GFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHAG-RVVEQVVRPTGLVDPQIE 422
           GFRLPSALDNRP++F+E+E++ PQTIFVSATPG YE E +G  + EQVVRPTGL+DP++E
Sbjct: 366 GFRLPSALDNRPLKFEEFESLMPQTIFVSATPGKYELEKSGDDIAEQVVRPTGLIDPELE 425

Query: 423 VRPALTQVDDLLSEIRKCVVKEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSDIDTVE 482
           VRP   QVDDLLSE+ K V   ERVLVTTLTKRMAEDLTDYL +H V+VRYLHSDIDTVE
Sbjct: 426 VRPVAIQVDDLLSEVAKRVAVNERVLVTTLTKRMAEDLTDYLDEHGVKVRYLHSDIDTVE 485

Query: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542
           R+EIIRDLRLG FDVLVGINLLREGLDMPEVSLV ILDADKEGFLRSERSLIQTIGRAAR
Sbjct: 486 RMEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545

Query: 543 NLNGRAILYADNVTGSMQRAMDETERRRNKQIAFNEANGIVPKGVTKDVRDILEGATVPG 602
           N+NG+ ILYAD +T SM RAM ETERRR KQ+ FNE +GI+P+GV K + D+++     G
Sbjct: 546 NVNGKVILYADRITDSMARAMAETERRRTKQMQFNEEHGIIPRGVVKKITDVMD----VG 601

Query: 603 SRSKKRRGEAKAAEES--ARYENELRSPSEITKRIRQLEEKMLSLARDLEFEAAAEARDE 660
            RS   RG  KA+  S      +  + P +I   I  LE++M   ARDLEFE AA  RDE
Sbjct: 602 ERSAPSRGAVKASGRSRDVGKPSMRQDPHQIAVTIDALEKQMHQHARDLEFEQAAALRDE 661

Query: 661 IHKLRERLLQ 670
           IH LR++LL+
Sbjct: 662 IHGLRQQLLE 671