Pairwise Alignments

Query, 671 a.a., excinuclease ABC, B subunit from Pseudomonas stutzeri RCH2

Subject, 733 a.a., Excinuclease ABC, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  770 bits (1989), Expect = 0.0
 Identities = 390/664 (58%), Positives = 495/664 (74%), Gaps = 11/664 (1%)

Query: 2   SKFELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLV 61
           ++F L + ++PAGDQP+AI +++ G+ A    Q LLGVTGSGKTF++A VIA + RPTL+
Sbjct: 36  AEFRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLI 95

Query: 62  LAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQM 121
           LAPNKTLAAQLYGEFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEKD+SIN+ I++M
Sbjct: 96  LAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM 155

Query: 122 RLSATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYT 181
           R +AT+ALLER D IIV +VSCIYG+G  +SY +M++ +  G  L + +LL+ L  LQ+T
Sbjct: 156 RHAATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQFT 215

Query: 182 RNDMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRFT 241
           RND+ F R  FRVRGD ++IFPA  +  A R+ L+ DE+ES+  FDPLTGE+   L   T
Sbjct: 216 RNDIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITASLDEVT 275

Query: 242 FYPKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELGY 301
            YP SH+VTPR  L  A+  IK EL+E L     Q K++EAQRLEQRT FDLEMI   G+
Sbjct: 276 VYPASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGH 335

Query: 302 CNGIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLV 361
           C  IENYSR+L+GR  G+PPPTLF+YLP DALL +DESHV+VPQ+G M++GD +RK  L 
Sbjct: 336 CKSIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLA 395

Query: 362 EYGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHAGRVV-EQVVRPTGLVDPQ 420
           E+GFRLPS +DNRP++F+EW+ + P +IFVSATPG +E E  G VV EQV+RPTGLVDP 
Sbjct: 396 EFGFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDPV 455

Query: 421 IEVRPALTQVDDLLSEIRKCVVKEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSDIDT 480
             +RP   QVDDLL E++ C  + ERVLVTTLTKRM+EDLT+YL++  VRVRY+HSDI+T
Sbjct: 456 CIIRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIET 515

Query: 481 VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE +LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 516 LERIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRA 575

Query: 541 ARNLNGRAILYADNVTGSMQRAMDETERRRNKQIAFNEANGIVPKGVTKDVRDILEGATV 600
           ARN+ GR ILYAD +T S+  A++ET RRR +Q  +N A+GI P+ V   + D+L     
Sbjct: 576 ARNVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVL----- 630

Query: 601 PGSRSKKRRGEAKAAEESARYENELRSPSEITKRIRQLEEKMLSLARDLEFEAAAEARDE 660
               S     +          +N+L   S + + +  L+++M + A DLEFE A   RDE
Sbjct: 631 ----SSVYEKDYVTVTTGVSGDNQLVGKS-LREHLADLDKRMRAAAADLEFEEAGRLRDE 685

Query: 661 IHKL 664
           I +L
Sbjct: 686 IRRL 689