Pairwise Alignments

Query, 671 a.a., excinuclease ABC, B subunit from Pseudomonas stutzeri RCH2

Subject, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  790 bits (2040), Expect = 0.0
 Identities = 409/674 (60%), Positives = 504/674 (74%), Gaps = 10/674 (1%)

Query: 4   FELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLVLA 63
           F L T F+P GDQPEAI Q++  +  G+  Q LLGVTGSGKTF++ANVIA   RP L+LA
Sbjct: 6   FRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILA 65

Query: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123
           PNKTLAAQLY EF+A FP+NAVEYFVSYYDYYQPEAYVP+SDT+IEKD+SIND+I+++R 
Sbjct: 66  PNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 125

Query: 124 SATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYTRN 183
           +AT ALL R D +IV +VSCIYGLG P+ Y ++V+ V+ G R     L+ RL  +QY RN
Sbjct: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQRN 185

Query: 184 DMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243
           D DF R TFRVRGDV+++ PA     A+RIE F D+++++S  DPLTGEV+  + +   Y
Sbjct: 186 DFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTVIY 245

Query: 244 PKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELGYCN 303
           P SHYV+ R+ L+ A+  I+DEL ERL   +S N+LVEAQRLEQRT  DLEM+ ELGYCN
Sbjct: 246 PASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYCN 305

Query: 304 GIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363
           GIENYSR+L GR AG+PP  L DY P D LL +DESH++VPQVGAMYKGDRSRK TLV++
Sbjct: 306 GIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVDF 365

Query: 364 GFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQIE 422
           GFRLPSALDNRP+ F E+     QT++VSATPG +E + + G + EQ++RPTGLVDP +E
Sbjct: 366 GFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVVE 425

Query: 423 VRPALTQVDDLLSEIRKCVVKEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSDIDTVE 482
           VRP   QVDDLL+E R    ++ERVL+TTLTKRMAEDLT++L +  + VRYLHSDIDT+E
Sbjct: 426 VRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDTME 485

Query: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542
           R+ II+ LR G  DVLVGINLLREGLD+PEVSLV+ILDADKEGFLRS  SLIQT GRAAR
Sbjct: 486 RMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRAAR 545

Query: 543 NLNGRAILYADNVTGSMQRAMDETERRRNKQIAFNEANGIVPKGVTKDVR---DILEGAT 599
           N  GR ILYAD VT SM+ AMDET RRR +Q A+NEANGI P+ + K +    D +  A 
Sbjct: 546 NAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYSAA 605

Query: 600 VPGSRSKKR---RGEAKAAEESARYENELRSPSEITKRIRQLEEKMLSLARDLEFEAAAE 656
             G + K R   R  A A E  A Y     SP ++ K I++LE +M   A++LEFE AA 
Sbjct: 606 SEGGKGKGRGRGRQAAPAVENVAEYGT---SPEDMAKHIQKLEREMREAAKELEFERAAT 662

Query: 657 ARDEIHKLRERLLQ 670
            RD I  LRERL++
Sbjct: 663 LRDRIRLLRERLIE 676