Pairwise Alignments

Query, 671 a.a., excinuclease ABC, B subunit from Pseudomonas stutzeri RCH2

Subject, 673 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella sp. ANA-3

 Score =  915 bits (2366), Expect = 0.0
 Identities = 457/672 (68%), Positives = 557/672 (82%), Gaps = 8/672 (1%)

Query: 2   SKFELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLV 61
           S F+L ++F PAGDQP AI ++++G+E+GL+ QTLLGVTGSGKTF+IANVIA + RPT++
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTII 63

Query: 62  LAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQM 121
           +APNKTLAAQLYGE K FFPNNAVEYFVSYYDYYQPEAYVP+S+TFIEKDAS+N HIEQM
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 122 RLSATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYT 181
           RLSATKALLER D +++ +VS IYGLGDP SY+KM+LH+ +GD + QR++L+RL+ LQYT
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSELQYT 183

Query: 182 RNDMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRFT 241
           RND++  R TFR RG+VIDIFPA+SD   +R+ELFDDE+E LS FDPLTG++++++ R T
Sbjct: 184 RNDLELQRGTFRARGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243

Query: 242 FYPKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELGY 301
            YPK+HYVTPRE +L+A E IK ELRER  YL   NKL+EAQR+ +R ++D+EM++ELGY
Sbjct: 244 VYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303

Query: 302 CNGIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLV 361
           C+GIENYSRYLSGR  GE PPTL DYLPAD LL+IDESHV+VPQ+GAMYKGDRSRK TLV
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 362 EYGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQ 420
           EYGFRLPSALDNRP++F+E+E + PQTI+VSATP PYE + + G +VEQVVRPTGL+DP+
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELDKSGGEIVEQVVRPTGLLDPE 423

Query: 421 IEVRPALTQVDDLLSEIRKCVVKEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSDIDT 480
           +EVRP   QVDDLLSE+ K V   ERVLVTTLTKRM+EDLT+YL +H V+VRYLHSDIDT
Sbjct: 424 LEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 481 VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540
           VERVEIIRDLRLG FDVLVGINLLREGLDMPEVSLV ILDADKEGFLRSERSLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 541 ARNLNGRAILYADNVTGSMQRAMDETERRRNKQIAFNEANGIVPKGVTK---DVRDILEG 597
           ARN+NG+ ILYAD +T SM +AM ETERRR KQ A+N  +GIVPKGV K   DV D+ +G
Sbjct: 544 ARNVNGKVILYADRITQSMAKAMGETERRREKQHAYNLEHGIVPKGVVKRITDVMDVDDG 603

Query: 598 ATVPGSRSKKRRGEAKAAEESARYENELRSPSEITKRIRQLEEKMLSLARDLEFEAAAEA 657
                  S    G+  A  ++ RY+ +    ++++  I +LE++M   AR+LEFE AA  
Sbjct: 604 RDTEKGYSPSSLGKV-AEPKAKRYQAD---AAQLSHDIDKLEKQMHEHARNLEFEQAAAL 659

Query: 658 RDEIHKLRERLL 669
           RDE+ +LRE L+
Sbjct: 660 RDEVKRLRELLI 671