Pairwise Alignments

Query, 863 a.a., type VI secretion ATPase, ClpV1 family from Pseudomonas stutzeri RCH2

Subject, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

 Score =  715 bits (1846), Expect = 0.0
 Identities = 400/862 (46%), Positives = 554/862 (64%), Gaps = 21/862 (2%)

Query: 1   MINVDLQQLVQALDAETKRDLEGAAERCVVRGGSKILVEDLLLGLLERSDGLLKRALLDA 60
           MI ++L  L+  L+A++K  LE AA  C+ R   ++ +E  L  LL+     ++  L  A
Sbjct: 1   MIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQA 60

Query: 61  EVDAGALAQALQPRGEHSESRN--PVFSTELVQWLQDALLVASLELGQSQIDQAALILAL 118
            ++   + QA+       +  +  P FS  LV+ LQ+A L++S EL Q+++   A+ LA 
Sbjct: 61  GLEVDQVKQAIASTYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAA 120

Query: 119 LRNPLRYAGSHYQPLLARLDAERLR-----------DFALSQQPQGSTGKPAAGGESNLA 167
           L    RY       L   ++ E L+           + A+++  + +     A  E+ L 
Sbjct: 121 LTRADRYLSFKLISLFEGINRENLKKHFAMILSDSAETAVAKTDKNAANPLQAAAETPLG 180

Query: 168 RFTHNFTQQARDGKLDPVLCRDSAIRQMIDILARRRKNNPIVVGEAGVGKTAIVEGLALR 227
           RF  N T+QAR+G+LDPVL R++ +  M+DIL RRRKNNPIVVGEAGVGK+A++EGLALR
Sbjct: 181 RFCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALR 240

Query: 228 IASGEVPATLKGVELLCLDLGLLQAGASVKGEFERRLQGVIDEVKASPKPIILFIDEAHT 287
           + +G+VP  L+ VEL  LDLG LQAGASVKGEFE+RL+GVID +K SPKPIILFIDEAHT
Sbjct: 241 VVAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHT 300

Query: 288 LIGAGGQAGSGDAANLLKPALARGELRTIAATTWSEYKKYFEKDPALARRFQPVQLHEPS 347
           LIG+G Q G  DAANLLKPALARGEL T+AATTW EYKKYFEKDPAL RRFQ V+L EP+
Sbjct: 301 LIGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPT 360

Query: 348 VQEAVTILRGLAPVYEKSHGIYLRDDAVAAAAELSARYLAGRQLPDKAVDVLDTACARVR 407
           + +AV ILRGL  VYEK+H + + DDA+ AAAELSARY++GRQLPDKA+DVLDTACAR+ 
Sbjct: 361 IDQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIA 420

Query: 408 ISLAAAPEALERLRGEVAEGERQREAMRRDLAVGLPVDAAALERLEQRLIAAGDEIEQLE 467
           I++   P+ L  L     + + + + + R   +G  VD+  L+ L  + +A   E   L 
Sbjct: 421 INMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALT 480

Query: 468 TRWAKQRLLAERLLDLRKRTAEARSAANEDGEVPSLDELETELRAVQAELAAAQAKQRLV 527
             W +Q+ L E ++ LR    E   A  +D +   L  + T L+     L A    +RL+
Sbjct: 481 QSWQQQKSLVESIIALRAELMELSQAQEQDPD--HLLVVRTALQEQYQALDAIDHAERLM 538

Query: 528 SHEVCPRLVAEVISHWTGVPLAQLAREHNAQVANFAADLRARVRGQEQAVEALDRAMRAA 587
             +V    +AEVI+ WTGVP+ Q+  +   ++ +  + L   ++GQE A+E + R +  A
Sbjct: 539 HPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLLTA 598

Query: 588 AAGLNKPDAPVGVFLLVGPSGVGKTETALALADLLYGGERFLTVINMSEFQEKHSVSRLI 647
            A L +P  P G FLLVGPSGVGKTET + LA+ LYGG++FLT INMSE+QEKH+VSRLI
Sbjct: 599 RADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTVSRLI 658

Query: 648 GAPPGYVGYGEGGMLTEAVRQKPYSVILLDEVEKADPDVMNVFYQIFDKGVANDGEGREI 707
           G+PPGYVGYGEGG+LTEA+R+ PYSV+LLDEVEKA P+V+N+FYQ FDKG   DGEGR I
Sbjct: 659 GSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGRVI 718

Query: 708 NFRNTLILMTSNLASERIASFCTAGQRPTAEDLELAIRPQLSQHFKPALLGRMRVVPYYP 767
           + +N +  +TSNL  + I  +     +     L+ A+ P+L+  FKPALL RM V+PY P
Sbjct: 719 DCQNIVFFLTSNLGYQTIVDYADEPAK-----LDEALYPELAAFFKPALLARMEVIPYLP 773

Query: 768 IAGAVLDELVALKLVRFGERLQRR-QLQFSHCPALVTHLSERCDDSDSGARLIDHLIEQH 826
           +   VL ++V  KL R  +  + R   +     +L+  +  R   S++GAR+++ +IE  
Sbjct: 774 LGKEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRATRSENGARMLEAIIEGQ 833

Query: 827 LQPLVVDRLLDAMASGEPLQQV 848
           L P V   LL+ +A   P++++
Sbjct: 834 LLPPVSLALLNKLAERAPVERI 855