Pairwise Alignments

Query, 863 a.a., type VI secretion ATPase, ClpV1 family from Pseudomonas stutzeri RCH2

Subject, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

 Score =  519 bits (1336), Expect = e-151
 Identities = 298/733 (40%), Positives = 438/733 (59%), Gaps = 43/733 (5%)

Query: 142 LRDFALSQQPQGSTGKPAAGGES-----------NLARFTHNFTQQARDGKLDPVLCRDS 190
           L++F L+++      +   GG+             L +FT + T++A  GKLDPV+ RD 
Sbjct: 126 LKEFGLTEKKVSEAIEKIRGGQKVNDPNAEELRQALEKFTIDLTERAEQGKLDPVIGRDD 185

Query: 191 AIRQMIDILARRRKNNPIVVGEAGVGKTAIVEGLALRIASGEVPATLKGVELLCLDLGLL 250
            IR+ I +L RR KNNP+++GE GVGKTAIVEGLA RI + EVP  L+G  +L LD+G L
Sbjct: 186 EIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSLDMGAL 245

Query: 251 QAGASVKGEFERRLQGVIDEVKASPKPIILFIDEAHTLIGAGGQAGSGDAANLLKPALAR 310
            AGA  +GEFE RL+ V++E+      IILFIDE HT++GAG   GS DA N+LKPALAR
Sbjct: 246 VAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALAR 305

Query: 311 GELRTIAATTWSEYKKYFEKDPALARRFQPVQLHEPSVQEAVTILRGLAPVYEKSHGIYL 370
           GEL  + ATT  EY++Y EKDPAL RRFQ V + EP+V++ + ILRGL   YE  H + +
Sbjct: 306 GELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEI 365

Query: 371 RDDAVAAAAELSARYLAGRQLPDKAVDVLDTACARVRISLAAAPEALERLRGEVAEGERQ 430
            D A+ AAA LS RY++ RQLPDKA+D++D A + +R+ + + PEAL++L  ++ + + +
Sbjct: 366 TDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKIIQLKIE 425

Query: 431 REAMRRDLAVGLPVDAAALERLEQRLIAAGDEIE-------QLETRWAKQRLLAERLLDL 483
           ++A+  +            E  E+RL    +E++       +LE  W  ++        +
Sbjct: 426 QQALSNEHD----------EASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHI 475

Query: 484 RKRTAEAR---SAANEDGEVPSLDELE----TELRAVQAELAAAQAKQR--LVSHEVCPR 534
           +    +AR     A   G++  + EL+     EL   Q +LAA    Q   L+ ++V   
Sbjct: 476 KAALEQARMDLEVARRAGDLNRMSELQYGRIPELEK-QLDLAAQAEMQEMTLLRNKVTDA 534

Query: 535 LVAEVISHWTGVPLAQLAREHNAQVANFAADLRARVRGQEQAVEALDRAMRAAAAGLNKP 594
            +AEV+S  TG+P++++      ++      L  RV GQ++AVE +  A+R + AGL+ P
Sbjct: 535 EIAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDP 594

Query: 595 DAPVGVFLLVGPSGVGKTETALALADLLYGGERFLTVINMSEFQEKHSVSRLIGAPPGYV 654
           + P+G FL +GP+GVGKTE    LA+ L+  E  +  ++MSEF EKHSV+RL+GAPPGYV
Sbjct: 595 NRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYV 654

Query: 655 GYGEGGMLTEAVRQKPYSVILLDEVEKADPDVMNVFYQIFDKGVANDGEGREINFRNTLI 714
           GY EGG LTEAVR+KPYSVILLDEVEKA PDV N+  Q+ D G   DG+GR ++FRNT++
Sbjct: 655 GYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVV 714

Query: 715 LMTSNLASERIASFCTAGQRPTAEDLELAIRPQLSQHFKPALLGRM-RVVPYYPIAGAVL 773
           +MTSNL S RI        R   + ++  +   +S+HF+P  L R+   V ++P+    +
Sbjct: 715 IMTSNLGSSRIQENFA---RLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHI 771

Query: 774 DELVALKLVRFGERLQRRQLQFSHCPALVTHLSERCDDSDSGARLIDHLIEQHLQ-PLVV 832
             + +++L R  +RL  R  Q       +  ++    D   GAR +   I+Q+++ PL  
Sbjct: 772 KSIASIQLARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAK 831

Query: 833 DRLLDAMASGEPL 845
             L      G P+
Sbjct: 832 SILAGKFLPGSPI 844