Pairwise Alignments

Query, 505 a.a., Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains from Pseudomonas stutzeri RCH2

Subject, 448 a.a., Type IV fimbriae expression regulatory protein PilR from Pseudomonas fluorescens FW300-N2E2

 Score =  256 bits (655), Expect = 9e-73
 Identities = 158/380 (41%), Positives = 222/380 (58%), Gaps = 12/380 (3%)

Query: 132 LQDEQQRVAGLLLTASTESRELHGFSGSLSQLGAFG-LTQLHLLQRLRAPGSTTPPAAPV 190
           +Q  QQR   L +   T    L     +L + GAF  LT+   L RLR   ++     PV
Sbjct: 69  VQHIQQRYPQLPVAMITAYGSLETAIDAL-KAGAFDFLTKPVDLGRLRELVTSALRLPPV 127

Query: 191 SPCASGY--GLIGDSPRMRAVYQLIGKVLHSPVNVLLTGETGTGKELVARAIHDCGFRRS 248
           +   +     L+GDSP M +V + I K+  S   V ++GE+G GKELVAR IH+ G R +
Sbjct: 128 ATPGTTLERSLLGDSPPMLSVRKQIEKLARSQAPVYISGESGCGKELVARLIHEQGPRAN 187

Query: 249 KPFVVQNCASLPEQLLESELFGYRKGAFTGADRDRSGLLDAANGGTLFLDEIGDMPLLLQ 308
            PFV  NC ++P +L+ESE FG+RKG+F+GA  D+ GL  AA+GGTLFLDE+ D+PL +Q
Sbjct: 188 LPFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLAMQ 247

Query: 309 AKLLRVLQEGEVRPLGSTETHKVDVRIVAATHRDLRSQVENGLFREDLFYRLSHFPIELP 368
            KLLR +QE  VR +G  +   VDVRI+ ATH+DL  +V  G FR+DL+YRL+   + +P
Sbjct: 248 VKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVP 307

Query: 369 PLRERDEDILRLARHFADKACAFLQRDLCRWSDAALERLAGYAFPGNVRELKGLVERAVL 428
           PLRER EDI  LA H   +  A       +    AL+ L  Y FPGNVREL+ ++ERA  
Sbjct: 308 PLRERREDIELLANHMLQRLAANTGSPPVKLHPQALDALRSYRFPGNVRELENMLERAYT 367

Query: 429 LCEGGELLPEHLNLHV--------EASLDSSLNLRERMERVERSLLMDCLRKNGGNQSQA 480
           LCE  ++  + L L             L    NL + +E VER L++  L +   N++ A
Sbjct: 368 LCEQQQIEADDLRLAEGNGSAEPGNPDLMQVDNLEDYLEDVERKLILQALEETRWNRTAA 427

Query: 481 ARELGLPRRTLLYRMERLNI 500
           A+ L L  R++ YR+++L +
Sbjct: 428 AQRLKLSFRSMRYRLKKLGL 447