Pairwise Alignments

Query, 671 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1186 a.a., PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  136 bits (343), Expect = 5e-36
 Identities = 119/435 (27%), Positives = 184/435 (42%), Gaps = 35/435 (8%)

Query: 252  DHAQGLAEETRHSNRKLELEVQVRSKIEQKLTGFQKYLNSIIDSMPSALIALDEQLYVTQ 311
            D  + L EE      KL  E+ +RS++E  L   Q  + +I  S+   ++ +D    +  
Sbjct: 763  DQQRRLEEEVAERTFKLSAEISMRSRVENVLRDSQGRMRAIAASLFEGVLLIDAHGIIVF 822

Query: 312  WNQEASALSGT------PLDDALN-----QPVFVAFEPLKPFLAQIRRTSEQHVVAKIER 360
             N+ A     T       LD+ L      + +  A  P +      R       +   + 
Sbjct: 823  ANKSAYRWLETVDLVDHELDEVLKLRGTGRLIDFAEGPFR------RVIDSGETLIDDDA 876

Query: 361  VTWLRNDEPHHYALTCYPLTGAGGRGV-VIRIDDITQRINMEEMMVQSEKMLSVGSLAAG 419
               + +      A    PL   G R + V+    I      +   +Q+ ++ SVG LAAG
Sbjct: 877  AFVVGSGHVVSVAYAASPLEEGGKRRIAVLSFRSIDALKEAQREALQASRLASVGQLAAG 936

Query: 420  MAHEINNPLGAILHNAQNIRRRLSP---ELERNREAAEETGVRLEAVNQYLQR------R 470
            +AHEIN P+  I  N + I   L      L   R  A   G+  EA   +  +       
Sbjct: 937  IAHEINTPIQYIGDNLRFIEGALGELGGVLADLRALAARGGLEAEADGCFAAKDIAYLME 996

Query: 471  EVPQLLDGIQQAGSRAAKIVSHMLSFSRMSNRQLADCHLPVLIDQALEIAGNDFALMEGF 530
            E+P       Q     A IV  M  FS           +   ID  L ++ N++  +   
Sbjct: 997  ELPLAATQSLQGVDHVAHIVRSMKEFSHPGTTAKVATDINRAIDSTLTVSRNEWKQLA-- 1054

Query: 531  DFKAIDIVRDFDPRVDRVPCIGNELEQVLLNLLKNAAQAIHAHQV-GEPGQIILRTRLNP 589
                  +  D D  +  + C   E+ QVLLNL+ NAA AI   +  G+ G I + TR   
Sbjct: 1055 -----QVETDLDDDLPLILCFAAEINQVLLNLIVNAAHAIETVRAEGQLGTIRIATRGEA 1109

Query: 590  PWAEIQVEDNGGGIPENVRKRIFEPFFTTKEVGQGTGLGLSVSYFIITNNHQGQMEVQCQ 649
               EI++ D+G G+P  +R +IF+PFFTTK VG+GTG GLS+   ++   H G+M +   
Sbjct: 1110 ECIEIRITDSGPGVPPAIRDKIFDPFFTTKSVGKGTGQGLSICRDVVVTKHGGKMYLDTS 1169

Query: 650  PGHGTTFTLRLPLNS 664
               G  F +RLP+ +
Sbjct: 1170 VAPGACFVVRLPIGN 1184