Pairwise Alignments

Query, 671 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 987 a.a., two-component sensor from Marinobacter adhaerens HP15

 Score =  137 bits (346), Expect = 2e-36
 Identities = 124/418 (29%), Positives = 191/418 (45%), Gaps = 48/418 (11%)

Query: 256 GLAEETRHSNRKLELEVQVRSKIEQKLTGFQKYLNSIIDSMPSALIALDEQLYVTQWNQE 315
           G A++ R+  R L       + +  +L   +++    + ++P    ++ E   +  WN  
Sbjct: 597 GTAQDIRYVERALGDYQNRLTGLAGELDNLRRHYRQTLQNLPIPACSVGEDGEILMWNHA 656

Query: 316 ASALSGTPLDDALNQPVFVAFEPLKPFLAQIRRTSEQHVVAKIERVTWLRNDEPHHYALT 375
             AL+G   DD +   +    E     L    R  + H   + +    LR  +PH   L 
Sbjct: 657 MEALTGITADDVVGARLMALPEHWHLLLDDFNRGPDLH---RYKHRLDLRG-KPHWLNLH 712

Query: 376 CYPLTGAGGR--GVVIRIDDITQRINMEEMMVQSEKMLSVGSLAAGMAHEINNPLGAILH 433
              L+G      G +I ++D T+   +E+ ++ SE++ SVG LAAG+AHEI NP+  I  
Sbjct: 713 KAALSGPDHTEGGSIILVEDQTETRLLEDELMHSERLASVGRLAAGVAHEIGNPVTGISS 772

Query: 434 NAQNIRRRLSPELERNREAAEETGVRLEAVNQYLQRREVPQLLDGIQQAGSRAAKIVSHM 493
            AQN++                    LE  N      ++    D IQQ   R + I+  +
Sbjct: 773 LAQNLK--------------------LETDNP-----DILDTADQIQQQTRRISTILQSL 807

Query: 494 LSFSRMSNRQLADCHLPVLIDQALEIAGNDFALMEGFDFKAIDIVRDFDPRVDRVPCIGN 553
           ++F+R  N   A+ + PV I + +E + N  +L +      I  V D  P +     +G+
Sbjct: 808 MNFARTGNHAQANRYEPVAIHRCVEESINLLSLSD--KGLGIHYVNDCPPSLQ---VLGD 862

Query: 554 E--LEQVLLNLLKNAAQAIHAHQVGEPGQIILRTRLNPPWAEIQVEDNGGGIPENVRKRI 611
           E  L QV +NLL NA  A       E G I +  + +   A I+V D G GIP +    I
Sbjct: 863 EQRLVQVFVNLLANARDASP-----EGGTIRVSGKGDGYSAIIEVVDEGSGIPGDQLDHI 917

Query: 612 FEPFFTTKEVGQGTGLGLSVSYFIITNNHQGQMEVQ----CQPGHGTTFTLRLPLNSP 665
           FEPF+TTK   +GTGLGLS+ Y II   H G ++V+       G GT   LRLP   P
Sbjct: 918 FEPFYTTKAPNKGTGLGLSLVYSII-EEHYGNVQVESPANADTGRGTCVRLRLPAYEP 974