Pairwise Alignments

Query, 575 a.a., Flp pilus assembly protein TadD, contains TPR repeats from Pseudomonas stutzeri RCH2

Subject, 484 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score = 52.0 bits (123), Expect = 5e-11
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 29/164 (17%)

Query: 187 PQLTFGKAVL---LQQDDRSDEALS-LLQKQPAKQRQIPSILLEARLLHSLQRSDEALPL 242
           P + +GKA++   L+Q D+++  L+ L+++QP     + +I   + L   L+++D+A  L
Sbjct: 307 PSIQYGKALVYLDLKQFDKAEPLLTQLVKEQPDNHFYLDAI---SDLYIELKQADKAQSL 363

Query: 243 LEKSLRQHPEDKRLRLTYARLLVEQERLEDAMGEFATLVQQYPAD--------------- 287
           LEK+L+Q P +  L + YA +L++Q++  DA+          P D               
Sbjct: 364 LEKALKQTPNNSVLTINYANVLLKQDKFTDAIRILQRYTHDNPNDINGWQLLSEANSRLG 423

Query: 288 ---DDLRFSMALVCMEAEAWREATAY---LEELIERGSHVDAAY 325
              +DL     ++ ++A  W +A  +     +L+E GS   A Y
Sbjct: 424 NSAEDLAARGEIMALQAN-WNKAIQFYTQASQLVELGSLAQARY 466



 Score = 41.6 bits (96), Expect = 7e-08
 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 94  IAEYLGAEQAALDTAMIWARNAPQSLDAQRAAAVQLARAGRYEESMEF------MEKVLQ 147
           IA Y G +    D A+ W   + + +DA    ++Q  +A  Y +  +F      + ++++
Sbjct: 279 IARYAGIDA---DAALDWFARSEKKIDATLQPSIQYGKALVYLDLKQFDKAEPLLTQLVK 335

Query: 148 GQGDTHFDFLALSASETDPDTRAGLLQSFDKLLLKHPDNPQLTFGKAVLLQQDDRSDEAL 207
            Q D HF   A+S    +           +K L + P+N  LT   A +L + D+  +A+
Sbjct: 336 EQPDNHFYLDAISDLYIELKQADKAQSLLEKALKQTPNNSVLTINYANVLLKQDKFTDAI 395

Query: 208 SLLQK 212
            +LQ+
Sbjct: 396 RILQR 400



 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 15/140 (10%)

Query: 439 DLAQLERD---LRFIIEREPDNAMALNALGYTLADRTNRHDEALQLIEQAYQLNPDDPAI 495
           DL Q ++    L  +++ +PDN   L+A+   L     + D+A  L+E+A +  P++  +
Sbjct: 319 DLKQFDKAEPLLTQLVKEQPDNHFYLDAIS-DLYIELKQADKAQSLLEKALKQTPNNSVL 377

Query: 496 LDSLGWVNFRLGNLTEAEALLRKALQRFPD--------HEVAAHLG---EVLWTMGERSE 544
             +   V  +    T+A  +L++     P+         E  + LG   E L   GE   
Sbjct: 378 TINYANVLLKQDKFTDAIRILQRYTHDNPNDINGWQLLSEANSRLGNSAEDLAARGEIMA 437

Query: 545 ARAVWAKALKLQPDSEILRE 564
            +A W KA++    +  L E
Sbjct: 438 LQANWNKAIQFYTQASQLVE 457



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 15/114 (13%)

Query: 405 RLEQAWKLAEQALEDFPDD------LNLLYTRAMLAEKRGDLAQLERDLRFIIEREPDNA 458
           + ++A  L  Q +++ PD+      ++ LY     A+K   L  LE+ L+    + P+N+
Sbjct: 322 QFDKAEPLLTQLVKEQPDNHFYLDAISDLYIELKQADKAQSL--LEKALK----QTPNNS 375

Query: 459 -MALNALGYTLADRTNRHDEALQLIEQAYQLNPDDPAILDSLGWVNFRLGNLTE 511
            + +N     L  + ++  +A++++++    NP+D      L   N RLGN  E
Sbjct: 376 VLTINYANVLL--KQDKFTDAIRILQRYTHDNPNDINGWQLLSEANSRLGNSAE 427