Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 418 a.a., Phage integrase from Pseudomonas fluorescens FW300-N2E2

 Score =  189 bits (481), Expect = 1e-52
 Identities = 123/404 (30%), Positives = 202/404 (50%), Gaps = 15/404 (3%)

Query: 1   MPENL--LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYR--LQGKENLFAI 56
           MP N   L+D ++K+VK   +D+ LSDG GL L V+ +G  +W + YR  L       A+
Sbjct: 1   MPTNATRLSDRQLKAVKATGKDFVLSDGDGLQLRVRASGSMMWNFNYREPLTRSRINMAL 60

Query: 57  GSFPQVSLAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQA 116
           G +P +SLA AR    +AR L+  GI P  +R +V+   L          E +F KVA A
Sbjct: 61  GPYPDLSLANARKKAVEARELLALGIDPKAQRDEVRHAKLAET-------EHTFEKVATA 113

Query: 117 YLAEIKPVFAHSSYRTKESR-IRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAI- 174
           +  E+K      +Y     R +  ++ P     P+S I    +  +L   +A G+   + 
Sbjct: 114 WF-ELKKDSVTKAYGEDIWRSLTLHVLPSMKTTPLSQITAPMVIKILRPIEAKGSLETVK 172

Query: 175 HVKGDLSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGY 234
            +   L+ I  + V  GL+ ANP+  +R + + P  E+ AA+  E++ +    +      
Sbjct: 173 RLSQRLNEIMTYGVNSGLIFANPLNGIRAVFKKPKKENMAALPPEELPELMMEIANASIK 232

Query: 235 PETALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVL 294
             T   +     T  RP EAA   W + DF   +W  P  +MK RR H  PL+ QA+A+L
Sbjct: 233 RTTRCLIEWQLHTMTRPAEAATTRWADIDFNKRIWTIPPERMKKRRPHTIPLTDQALALL 292

Query: 295 KDLQRITGGGRYLFP-HRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGF 353
           + L++++G   Y+FP  R+ +          A++ M        H  R+  ST  NE+G+
Sbjct: 293 ETLKQLSGNREYVFPSDRNPRTHANSQTANMALKRMGFQDRLVSHGLRSMASTILNEHGW 352

Query: 354 RPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAA 397
            P+ IE  LAHV+ ++VR+ YN+   +++RR ++  W+ ++  A
Sbjct: 353 DPELIEVALAHVDKDEVRSAYNRTDYIERRRPMMAWWSEHIQKA 396