Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  191 bits (485), Expect = 3e-53
 Identities = 114/400 (28%), Positives = 196/400 (49%), Gaps = 11/400 (2%)

Query: 4   NLLTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENL--FAIGSFPQ 61
           N LT  ++++ KP D+ ++LSDGG L+  V+P+  + W+++Y+  G++ +   + G++P 
Sbjct: 3   NNLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPD 62

Query: 62  VSLAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEI 121
           +SLAEAR    +AR  +  GI P   +++ K + +         Q ++F  VA+ + A  
Sbjct: 63  MSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITE-------QNATFKFVAEQWKATK 115

Query: 122 KPVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDL- 180
           +      +      ++  Y  PK   +P+S +        L   ++ G    +     L 
Sbjct: 116 EGQIKEKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLM 175

Query: 181 SAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETALC 240
           + I  +AV  G++ ANP+  +R + +        A+   ++    + +        T   
Sbjct: 176 NEIMNYAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFL 235

Query: 241 LRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRI 300
           +     T  RP EA+ A WEE D  + +W  P  +MK  REHV PL+AQ +A+L+ ++ I
Sbjct: 236 IEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPI 295

Query: 301 TGGGRYLFP-HRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIE 359
           +G   ++FP  R+ K  T       A+  M     TT H  R   ST  NE GF PD IE
Sbjct: 296 SGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIE 355

Query: 360 RQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAAEH 399
             LAH + N++R  YN+   LD RR L+  W+ ++  + +
Sbjct: 356 AALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSY 395