Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  202 bits (514), Expect = 1e-56
 Identities = 125/400 (31%), Positives = 209/400 (52%), Gaps = 19/400 (4%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYR--LQGKENLFAIGSFPQVS 63
           LTD ++K+ KP ++++ L DG GL L +KP G K W + Y     GK    + G +P +S
Sbjct: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67

Query: 64  LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLA---- 119
           L +AR +   A+ L+ QGI P  +R++ +Q +       K   E +F  V + + A    
Sbjct: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVH-------KEIHEHTFENVTKDWFAIKQN 120

Query: 120 EIKPVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAI-HVKG 178
           ++ P +A   +R+ E  I  ++S K    P+  I   +I  LL+  +A G+   +  +  
Sbjct: 121 DVTPDYALDIWRSLELHIFPHISDK----PVKAITAPEIIELLKPIEAKGSLETVKRLTQ 176

Query: 179 DLSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETA 238
            L+ +  FA   GL++ANP+  ++   + P  E+ AA+T  ++ +   A+        T 
Sbjct: 177 RLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTR 236

Query: 239 LCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQ 298
             L     T  RP EA+ A W+E ++E+ VW  PA +MK RREH  PL+ Q +A+L+ ++
Sbjct: 237 CLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMK 296

Query: 299 RITGGGRYLFP-HRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDA 357
            I+G   ++FP  R+ K          A++ M        H  R+  ST  NE GF PD 
Sbjct: 297 PISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDL 356

Query: 358 IERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAA 397
           +E  LAHV+ N+VR+ YN+   L++R+ ++  W+ ++  A
Sbjct: 357 VESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEA 396