Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  214 bits (545), Expect = 4e-60
 Identities = 134/405 (33%), Positives = 206/405 (50%), Gaps = 19/405 (4%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYR--LQGKENLFAIGSFPQVS 63
           LT+ +VK  K +D+++ LSDG GL L VK  G KLW  KY   +  K N  + G FP VS
Sbjct: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67

Query: 64  LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLA---- 119
           LAEAR  R +A+ L+   I P       KQ   E L + +   E++F K +  +L     
Sbjct: 68  LAEARKRRSEAKTLLALNIDP-------KQHKDEQLLKERAELENTFGKYSDRWLTLKRE 120

Query: 120 EIKPVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAI-HVKG 178
            +KP  A  +YR  E    K++ PK   +P+ DI  + +  +LE  KA G    +  +  
Sbjct: 121 SVKPETADKAYRALE----KHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCR 176

Query: 179 DLSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETA 238
            ++ +   AV  G +E N +  +  L   P  +    +  E++ +  QA+        T 
Sbjct: 177 IINEVMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATR 236

Query: 239 LCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQ 298
             L     T  RP E+A A W++ DF++ VW  PA +MK +R H  PL+ Q +A+L+ ++
Sbjct: 237 CLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMK 296

Query: 299 RITGGGRYLFP-HRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDA 357
            I+    Y+FP +++ K          A++ M        H  R   ST  NE GF PD 
Sbjct: 297 PISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDI 356

Query: 358 IERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAAEHSDT 402
           IE  LAHV+ N+VR  YN+A  L+QRR L+  W+ ++++A + +T
Sbjct: 357 IEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNT 401