Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

 Score =  127 bits (320), Expect = 5e-34
 Identities = 111/415 (26%), Positives = 184/415 (44%), Gaps = 41/415 (9%)

Query: 1   MPENLLTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFP 60
           MP N LTD +V+ +K         DGG L+L V+  G K +  K  +  K+  + IGS+ 
Sbjct: 1   MPINKLTDKQVRGIKKPGNH---PDGGNLYLRVRENGSKSFIVKATIDKKQREWTIGSYG 57

Query: 61  Q----VSLAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQA 116
                 SLAEAR  R++  A+++ G       + V Q       E        F   +  
Sbjct: 58  SEEHHFSLAEARKRRDEIMAVIRAGGISEPTGKSVTQ---SVEPESTTFPAPLFGPFSIE 114

Query: 117 YLAEIKPVFAHSSYR-----TKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAW 171
            + +I+  F ++ +R     T E+  +     + D +   D+ +  +RP+        A 
Sbjct: 115 LIQQIEGGFRNAKHRAQWRSTLETYCKSIWEKRVDRITTDDV-LAILRPIWST----KAE 169

Query: 172 AAIHVKGDLSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGY 231
            A  V+G +  +   A VRG        + +G L++   +      R+++Q+ +     +
Sbjct: 170 TASRVRGRIERVLNAAKVRGFRSGENPAAWQGHLQLLLPK------RQKLQRGHHPALPF 223

Query: 232 RGYPE-----------TALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARR 280
           +  P             +  L+ + LTA R GE   A+WEEFD E  +W  PA++MKA R
Sbjct: 224 QDLPTLWQKLTSIDTIASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAR 283

Query: 281 EHVSPLSAQAIAVLKDLQRITGGGRYLFPHRSGKGFTTPNRLTYAMRDMNLGRGTTPHCW 340
           EH+ PLS   I +LK +Q+I     ++FP        +   L+  +    L +G T H +
Sbjct: 284 EHLVPLSDSCIEILKRMQKIRHSD-FVFPGTREHAPLSDMTLSKVLH--GLCKGYTVHGF 340

Query: 341 RTTFSTWANE-NGFRPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYL 394
           R+TF  W  E   F  +  E  LAH   + V   Y +   L+ RR ++ AW  ++
Sbjct: 341 RSTFRDWCGEKTDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFI 395