Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 409 a.a., phage integrase family protein (RefSeq) from Shewanella loihica PV-4

 Score =  191 bits (486), Expect = 3e-53
 Identities = 129/402 (32%), Positives = 196/402 (48%), Gaps = 15/402 (3%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYR--LQGKENLFAIGSFPQVS 63
           LT+ ++K+ KP  +D  LSDGGGL L V+  G KLW + Y   +  K     IG +P + 
Sbjct: 8   LTNTQIKNQKPGPKDIVLSDGGGLQLRVRTNGSKLWNYNYYHPVTKKRVNIGIGPYPDIP 67

Query: 64  LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFA-KVAQAYLAEIK 122
           LA+AR    + R LV  G+ P  +R+Q      E+L   K  QE  +  K   A   EIK
Sbjct: 68  LAKAREIALEYRQLVACGVDPKSKREQ------ESL---KLKQEVLYTLKNVAAEWLEIK 118

Query: 123 PVFAHSSYRTKE-SRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAI-HVKGDL 180
                 S+  K  S +  ++ P+    P++ I    +  +    +A G+   I  +   L
Sbjct: 119 KSEVTKSHAAKTWSSLESHVFPELGDTPLNKITAPLVIKVFRPIEAKGSLETIKRLSQRL 178

Query: 181 SAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETALC 240
           + I  F V  G +++NP+  +R   + P  ES A +T  ++    + L        T   
Sbjct: 179 NEIMNFGVNCGYIDSNPLVGIRAAFKKPKKESMATLTPSELPLLMRHLSQASIKRVTRCL 238

Query: 241 LRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRI 300
           +     T  RP EAA A W+E D ++  W  PA KMK RREHV PL+ Q + +L  ++ I
Sbjct: 239 IEWQLHTMTRPSEAATARWDELDLDNLTWTIPAEKMKRRREHVIPLTQQMLGILDAIKPI 298

Query: 301 TGGGRYLFP-HRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIE 359
           +G   Y+FP  R  K          A++ M L      H  R   ST  NE GF  D IE
Sbjct: 299 SGHRDYIFPADRDPKSHCNTQTANVALKRMGLKGKLVSHGMRALASTTLNEQGFESDLIE 358

Query: 360 RQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAAEHSD 401
             L+HV++N+VRA YN++  L++RR ++  W+ ++  A   +
Sbjct: 359 AALSHVDANQVRAAYNRSDFLERRRPMMSWWSKHIEEASQGN 400