Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 405 a.a., hypothetical protein from Klebsiella michiganensis M5al

 Score =  136 bits (342), Expect = 1e-36
 Identities = 109/413 (26%), Positives = 188/413 (45%), Gaps = 38/413 (9%)

Query: 5   LLTDAKVKSVKPADRDWKLSDGGGLFLLVKPA----GGKLWRWKY--RLQGKENLFAIGS 58
           +LTD K + +KP D+   L  GG + L + P     G   W ++Y   +  K    ++G+
Sbjct: 3   ILTDTKARHIKPGDK--ALPHGGVIGLTLNPTRANKGRGYWIFRYVSPVTQKRRQASLGT 60

Query: 59  FPQVSLAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYL 118
           +P++S+AE        R  + + I P  E+  ++Q+N     E+++A   +F   A+   
Sbjct: 61  YPEISIAEVGKIASAMREQLAKNIDPLEEKS-IQQQN-----EKRKASIPTFQSAAETLH 114

Query: 119 AEIKPVFAHSSYRTKE-SRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVK 177
             + P + +  +  +  + ++ +  P      +  I    I  +L          A  VK
Sbjct: 115 PTLLPGWKNIKHGKQWITTLQTHAFPILGVKTLDTINAADIAEILSPIWLSHPATAKRVK 174

Query: 178 GDLSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKA-------AMTREQIQKFY-QALR 229
             +  + E+ + +G  + NP+  +  LL  P     A       AM  + I  F+   L 
Sbjct: 175 QRIYTVMEWGLAQGYCKINPVDVVAHLL--PQQNKLATRARHFPAMPWKAIPLFFANHLH 232

Query: 230 GYRGYPETALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQ 289
               Y  +   L ++ LTACR GE     W E + +  +W  P  KMK   +H  PL+ Q
Sbjct: 233 SDNAYDVSRALLAIVILTACRSGEVRAMRWCEINEKQQIWTIPPEKMKGGIQHRVPLTNQ 292

Query: 290 AIAVLKDLQRITGGGRY---LFPHRSGKGFTTPNRLTYAMRDMNLG-----RGTTPHCWR 341
           AI ++  ++     GR+   +FP    +   +   LT  +R +        R  T H +R
Sbjct: 293 AIKIILKMK-----GRHKDLVFPSVRKQTVLSDMALTSFLRRVEASSDIPDRVATAHGFR 347

Query: 342 TTFSTWANENGFRPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYL 394
           ++F  W +E+G+  D  ER LAH   +KV A Y++  LL+QRR ++QAWA Y+
Sbjct: 348 SSFRDWCSEHGYSRDLAERALAHAIQSKVEAAYHRTDLLEQRRPMMQAWADYV 400