Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 394 a.a., putative site specific integrase from Klebsiella michiganensis M5al

 Score =  206 bits (525), Expect = 7e-58
 Identities = 123/401 (30%), Positives = 206/401 (51%), Gaps = 29/401 (7%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLA 65
           L D +++  KP  + + L DG GL LL++P G K WR++YR  GK  + ++G +P ++LA
Sbjct: 3   LNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTITLA 62

Query: 66  EARTAREKARALVKQGIHPAHERQQVK---QRNLEALAERKRAQ--ESSFAKVAQAYLAE 120
           +AR+ R+ AR LV +G +P+  R++ K   Q   E+  E+   +  +   AK +  Y ++
Sbjct: 63  DARSRRDDARKLVAEGKNPSEVRKEQKIALQTESESAFEKIATEWHQMKSAKWSAGYASD 122

Query: 121 IKPVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIH-VKGD 179
           I   F +  +            P     P+ +I   ++  +L + +  GA   +  V+  
Sbjct: 123 IMEAFQNDIF------------PYVGTRPIGEIKPLELLNVLRKIEKRGALEKMRKVRQR 170

Query: 180 LSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETAL 239
            S +F +A+  G  E NP   L   L V  S     +  +++  F +AL  Y G     +
Sbjct: 171 CSEVFRYAIATGRAEFNPAADLSSALEVHQSNHFPFLKADELPDFLRALHSYTGSRLVQI 230

Query: 240 CLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQR 299
             +L+ +T  R  E   A W EFD ++A+W  PA +MK RR H+ PLS QA+ +L +L+ 
Sbjct: 231 ATKLLMITGVRTIELRAALWSEFDLDNAIWEIPAERMKMRRSHLVPLSTQALDLLNELKM 290

Query: 300 ITGGGRYLFPHRSGKGFTTPNR------LTYAMRDMNLGRGTTPHCWRTTFSTWANENGF 353
           +TG  RY+FP R+      PN+      +   ++ +  G   T H +R T ST  ++  +
Sbjct: 291 MTGNYRYVFPGRN-----DPNKPMSEASINQVIKRIGYGGKVTGHGFRHTMSTILHDQNY 345

Query: 354 RPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYL 394
               IE QLAH++ N +R TYN A  + QR+ ++Q +A  +
Sbjct: 346 NSAWIEIQLAHIDKNYIRGTYNHANYISQRKEMMQVYANMI 386