Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 420 a.a., site-specific recombinase, phage integrase family protein from Klebsiella michiganensis M5al

 Score =  184 bits (468), Expect = 3e-51
 Identities = 133/411 (32%), Positives = 207/411 (50%), Gaps = 34/411 (8%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQG--KENLFAIGSFPQVS 63
           L   +V++ KP D+ +K++DGGGL+L V   G K WR KYR     KE+  A G +P V+
Sbjct: 3   LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT 62

Query: 64  LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKP 123
           LA+AR  R++A+ L+ QGI P  E+++ +  N  A          +F  +A+ + A  K 
Sbjct: 63  LAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAY---------TFETIAREWHASNKR 113

Query: 124 VFAHSSYRTKESR-IRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAW-AAIHVKGDLS 181
                 +R++  R +  Y+ P      +  +    +   +++  A G    A  ++  ++
Sbjct: 114 W--SEDHRSRVLRYLELYIFPYIGTSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVT 171

Query: 182 AIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETALCL 241
           AI  +AV    +++NP   + G L    +    A+   +  +F   L  YRG   T + +
Sbjct: 172 AIMRYAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAV 231

Query: 242 RLIALTACRPGEAADAEWEEFDFEDAVWRRPAAK------------MKARREHVSPLSAQ 289
            L  LT  R  E   A WEEFDF+ ++WR PA +            MK + EH+ PLS Q
Sbjct: 232 ELSLLTFVRSSELRFARWEEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQ 291

Query: 290 AIAVLKDLQRITGGGRYLFP--HRSGKGFTTPNRLTYAMRDMNLGRGT--TPHCWRTTFS 345
           A+ +L  L++I+G    LFP  H + K   + N +  A+R M     T    H +RT   
Sbjct: 292 AMILLAQLKQISGDKELLFPGDHDATK-VMSENTVNSALRAMGYDTKTEVCGHGFRTMAR 350

Query: 346 TWANENG-FRPDAIERQLAHVESNKVRATY-NKALLLDQRRSLLQAWAGYL 394
               E+G +  DAIERQL+H E N VRA Y + +  LD+RR ++Q WA YL
Sbjct: 351 GALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL 401