Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 413 a.a., Prophage integrase IntA from Enterobacter sp. TBS_079

 Score =  196 bits (498), Expect = 1e-54
 Identities = 123/401 (30%), Positives = 213/401 (53%), Gaps = 19/401 (4%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYR--LQGKENLFAIGSFPQVS 63
           LTD ++K+ KP D D++L DG GL LL+K +G KLW+++Y   L  +    + G++P VS
Sbjct: 8   LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67

Query: 64  LAEARTAREKARALVKQGIHPA-HERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIK 122
           L++AR  R ++R L+ + I P  H+++QV+          + A+ ++F  VA+ +   +K
Sbjct: 68  LSDARKLRAESRVLLAKDIDPQEHQKEQVRNS--------QEAKTNTFLLVAERWW-NVK 118

Query: 123 PVFAHSSYRTKESR-IRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIH-VKGDL 180
                  Y     R + + + P    + +++I    +   ++  +A GA   +  +   +
Sbjct: 119 KTSVTEDYADDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLCQRI 178

Query: 181 SAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETALC 240
           + +  +A   GL++A P  ++      P  ++  ++  +Q+ +  Q +R       T   
Sbjct: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTIRMASISLSTRCL 238

Query: 241 LRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRI 300
                LT  RP EAA+A W+E DF+ + W+ PAA+MK  R+H  PL   AIA+L+ ++ +
Sbjct: 239 FMWQLLTITRPAEAAEARWDEIDFDASEWKIPAARMKMNRDHTVPLPDGAIAILEMMKSL 298

Query: 301 TGGGRYLFPHRSGKGFTTP---NRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDA 357
           +GG  ++FP R     T P     +  A++   LG     H  R+  ST  NE GF PD 
Sbjct: 299 SGGREFIFPSRIKP--TQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEQGFPPDV 356

Query: 358 IERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAAE 398
           IE  LAH++ N+VR  YN++  L+QRR ++Q W  ++S A+
Sbjct: 357 IEAALAHIDKNEVRRAYNRSDYLEQRRPMMQWWTDFVSKAD 397