Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 408 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  207 bits (526), Expect = 6e-58
 Identities = 130/401 (32%), Positives = 204/401 (50%), Gaps = 19/401 (4%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYR--LQGKENLFAIGSFPQVS 63
           L D +V+  KP ++++ LSDG GL L V+P G K W   Y      K     +G++P+++
Sbjct: 8   LNDTEVRQAKPREKEYNLSDGNGLMLRVRPIGSKTWLLNYSRPTSRKRANLTLGTYPELT 67

Query: 64  LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYL----A 119
           LA+AR     AR L+ Q I P   R+  +Q    ALA      E +F  VA  +      
Sbjct: 68  LADARRKALDARKLIAQDIDPQEHREGQRQ----ALAA---IHEHTFENVATQWFDIKKT 120

Query: 120 EIKPVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAI-HVKG 178
           EI    A S++R+ +  +  Y+       P+S I    +  +    +A G+   +  +  
Sbjct: 121 EITENHAASTWRSFKLHVLPYIG----STPISQITAPMVIEIFRPIEAKGSLETVKRLTQ 176

Query: 179 DLSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETA 238
            L+ +  +AV  GL+ ANP+  ++   + P  +  AAM   ++ +    L        T 
Sbjct: 177 RLNEVMTYAVNTGLIHANPLSGIKAAFKKPKKQKMAAMAPYELPELLSTLSRASIKRVTR 236

Query: 239 LCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQ 298
           L +     T  RP EAA A W+EF+F+D +W  PA +MK +REHV PLS   + +L++L+
Sbjct: 237 LLIEWQLHTMTRPNEAAGARWDEFNFDDRLWTIPAERMKMKREHVIPLSDACMLILQELK 296

Query: 299 RITGGGRYLFP-HRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDA 357
            I+G   YLFP  R+ K  +       A++ M L   TT H  R   ST  NE GF  D 
Sbjct: 297 SISGHREYLFPADRNPKTHSNVQTANAALKRMGLQDRTTAHGLRALASTTLNEQGFDWDV 356

Query: 358 IERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAAE 398
           +E  LAH + N+VR+ YN+A  L++RR +++ W+  + +AE
Sbjct: 357 VEAALAHTDKNQVRSAYNRATYLERRREMMEWWSKSIKSAE 397