Pairwise Alignments

Query, 361 a.a., TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component from Pseudomonas stutzeri RCH2

Subject, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 8/218 (3%)

Query: 55  KHLSESLKAVSGGDIQLRYYEPGELVPPFEIMDAVSSGKYPAGYTWIGYDQGTIPALPLY 114
           K L+++L+ +S G+I+L  Y   +L     ++  ++ G     Y   G     IP     
Sbjct: 43  KMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAV 102

Query: 115 SGAPFNMEPPAHLAWYYQGD-GKKLLEEIYAQRNIHPMLCSIIGPEGAGWFAKPIEKLED 173
              P+  +   HL   ++ D G+ + +E+  + N   +     G        +P+  +ED
Sbjct: 103 M-LPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETT-SNRPLNSIED 160

Query: 174 FDGLRIRFAGIGGKV--LEKLGASVTMVPGGEIYQALERKTIDATEFSQPAVDKMLGLDQ 231
           F GL++R       +   +  GAS T +   E+Y AL+   +D  E   P + K +   +
Sbjct: 161 FKGLKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTI-KTMKFYE 219

Query: 232 IIKNYIMPGWHQTLTTSHLLVNKDVWDKLKPESRALIE 269
           + KN  M   H  +    +++++  W KL    + +I+
Sbjct: 220 VQKNLAMT--HHIVNDQMVIISESTWQKLSDTDKDIIQ 255