Pairwise Alignments

Query, 361 a.a., TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component from Pseudomonas stutzeri RCH2

Subject, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  168 bits (426), Expect = 2e-46
 Identities = 108/347 (31%), Positives = 171/347 (49%), Gaps = 17/347 (4%)

Query: 8   SRIACAIGATTLLGASLLSGVASAAEKIRWQVPLAFPSHLIGLSTPV-----KHLSESLK 62
           SRI  A+  +T+LG       A A E   +++ LA      G +TP+     K++++   
Sbjct: 10  SRIMLALVLSTVLGT------AQANEPPVYKLTLA---ETWGANTPILGDAPKNMAKLAA 60

Query: 63  AVSGGDIQLRYYEPGELVPPFEIMDAVSSGKYPAGYTWIGYDQGTIPALPLYSGAPFNME 122
            +S G IQ+R     +   P  + D V SG+Y  G++   Y +G +P    +S  PF M 
Sbjct: 61  EMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTLFFSSMPFGMI 120

Query: 123 PPAHLAWYYQGDGKKLLEEIYAQRNIHPMLCSIIGPEGAGWFAKPIEKLEDFDGLRIRFA 182
                AW+Y G G  L+E++YA  N+          +  GWF K I  ++D  GL++R  
Sbjct: 121 ATEQYAWFYYGGGMPLMEKVYAPHNLLSFPGGNSDIQMGGWFKKEINSVDDLQGLKMRIP 180

Query: 183 GIGGKVLEKLGASVTMVPGGEIYQALERKTIDATEFSQPAVDKMLGLDQIIKNYIMPGWH 242
           G  G+VL KLGA  T +  GE+Y +LER TIDA E+  PA D  +G  +I   Y    WH
Sbjct: 181 GFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKIAP-YYYTAWH 239

Query: 243 QTLTTSHLLVNKDVWDKLKPESRALIEMGCESATLKGFAESEWAQPT--ALRDYQKQGVK 300
           +  + +  LVNK  WD L  + + ++E     A    + ++  A  T  A    +   +K
Sbjct: 240 EPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQAIDANATSWAAMKSEYPDIK 299

Query: 301 AQVLPEPVLRELQKVTDKVLDEMAAKDEMFKRVLTSQREFMKHHSIW 347
            +  P  VL  L++  +++L E AA D + K ++ SQ+ ++     W
Sbjct: 300 VRDFPPAVLAALRQANNELLQEQAASDPLAKEIIDSQQAYLTKVRDW 346