Pairwise Alignments

Query, 499 a.a., Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

Subject, 471 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  447 bits (1151), Expect = e-130
 Identities = 236/478 (49%), Positives = 324/478 (67%), Gaps = 20/478 (4%)

Query: 20  ERFRAVAMPLLFDHLNAQCEGTIAVNRQARIVWINDKYAEKVGIRDPSSVLGKEIEEVLP 79
           +R R +A+  LF+ +    EGT+ V+R A IVW+N++YA + G+      +G+  E V+P
Sbjct: 11  KRVRTLAIRSLFEIIEQSSEGTVIVDRDANIVWMNERYARRFGLNSAQEAIGRACESVIP 70

Query: 80  ASRLREVVESGQPSMIDLMAFGDEHFVVTRIPLRDEDGTLVGALGFVLFDRARHLKPLMA 139
           +S LREVV +G+P ++D+     E  VV R+P+ D  G ++GA+GF LFD  R L P++ 
Sbjct: 71  SSLLREVVRTGRPILLDMQDTPKEPLVVMRLPIHDSAGAVIGAIGFALFDELRSLSPMLK 130

Query: 140 KFTSLQTQLVATQNELAKARRARYTIAGFIGNSPAASEIKRQARRAAQLDATVLLRGETG 199
           ++ S+Q +L +T++ L +AR+ +Y  A FIG S A  E+KR+ARR+A  D+ VLL GETG
Sbjct: 131 RYLSMQEELASTRS-LLRARQTKYNFAHFIGTSNAGLEVKRRARRSASADSPVLLLGETG 189

Query: 200 TGKELLAQGIHNLSPRARGPFVAVNVAAIPESLVEAELFGTAPGAFTGADRKARIGKFEV 259
           TGKELLAQ IH+ SPRA   FV++N AAIPESL+EAE FGTAPGAFTGADRK R GK ++
Sbjct: 190 TGKELLAQAIHSASPRAHKAFVSINSAAIPESLLEAEFFGTAPGAFTGADRKGRAGKLQI 249

Query: 260 ANGGTLFLDEIGDLPLPLQAKLLRVLQEQEVEPLGSNQVKALNVRVIAATHIDLEAKVAA 319
           A GGTLFLDEIGD+PLPLQ+KLLRVLQE+E EP+GSN+V   +VRVIAAT +DLEA +  
Sbjct: 250 AQGGTLFLDEIGDMPLPLQSKLLRVLQEKEYEPVGSNEVLQSDVRVIAATSMDLEAAIKR 309

Query: 320 GQFRDDLYYRLNVLALRVPPLRERSSDIPAVVEHLLDDIANRSGQPPMELSPEALALLCA 379
           G+FR DLYYRLNVL + VPPLRER  D+PA+ E +L+++ ++      EL+P ALALLC 
Sbjct: 310 GEFRADLYYRLNVLPIHVPPLRERLDDLPALSEAILEELRSQH-----ELNPTALALLCQ 364

Query: 380 QPWRGNVRELGNLLERAQLSADGPQLQAAHLLPLLGEQARSADAPAYATSAPSAALPTEA 439
             W GN+REL N+LERA L +D   L AA +   +G        P    ++PS       
Sbjct: 365 HAWPGNIRELRNVLERAALLSDDLVLTAADIRAAIG-----TFIPVTRPASPSL------ 413

Query: 440 TPSEELPLQPLAQTIAQAERRALQSALAACKGNRRRAAMELGISRASLYSKLQQHGLS 497
              E LP +  +Q  A+ +R+ +++ LA C G    AA  LG+ R++LY K+   G++
Sbjct: 414 ---EPLPQETFSQARARFDRQLIETTLAQCGGKVVEAAERLGLGRSTLYKKMVALGIA 468