Pairwise Alignments

Query, 420 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 447 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

 Score =  223 bits (568), Expect = 9e-63
 Identities = 153/458 (33%), Positives = 218/458 (47%), Gaps = 59/458 (12%)

Query: 3   PHHKS--LCHILCGGAVVIATGPASAA--------FVEDSKASIDLRNFYMNRDFRSGD- 51
           PHH +  L  +     +   T PA AA        F++ +   +  RNFY+N D+R+   
Sbjct: 5   PHHSTAALKPLWLLALLTSGTAPAMAAELAQSTPGFLDGATLQVLSRNFYLNNDYRAPTP 64

Query: 52  -GQSKAEEWAQGFMLKMESGYTEGPIGFGVDAIGLLGVKLDSSPDRVGTGILQSDREAPN 110
            G+S  +EWAQGF+   ESG+T G IG G+DA G LG+KLD      GTG+L  D     
Sbjct: 65  AGKSYKQEWAQGFIASFESGFTPGTIGVGIDAHGFLGLKLDGGKGHSGTGLLPLDENG-- 122

Query: 111 RAQDDYGSAGITAKAKLSATTLHVGTLQPILPVVMRNDSRLLPQTYRGAWLQSKEIDGLT 170
           R++D Y SAG   K   S TTL VG +    PV    D RL P+   G  L S+E +G+ 
Sbjct: 123 RSEDHYSSAGGALKFNASRTTLAVGEMTVQSPVFDTADKRLQPEYASGLLLSSREFEGVD 182

Query: 171 LDLGKLDRVNQRNSSDNEEMTAFNGGRRNIQFGRQTSSDEFLFAGARYAWSPELSTSYYY 230
           L  G       +++S ++    F+G      +G  T      F GA       L  + Y 
Sbjct: 183 LQAGHFSAFKNQDASTSKG--DFSG------YGATTRHGVIDFIGADLLSGQALGGALYA 234

Query: 231 GGLDGIYKEHNFGLVHVLPLGDKQSFKSDLRYVHQTDDG---GSNVDADAFGAMFTYKLG 287
             L   ++++ +  +H   +G+      D    H  DDG      +D  A+     Y+  
Sbjct: 235 SELSDTWRQY-YANLHAT-VGE---LFLDGNLYHTRDDGKAIAGAIDTTAYSLSGKYRFN 289

Query: 288 GHAFGAGYQQLNGDTGFAYIAGSDNSLVNLVQINDFGNEDERSWQVRYDYDFAAMGIPGL 347
             AF   YQ++NGDT F ++ G    L N ++  DF    ERSWQ RYD D   +GIPGL
Sbjct: 290 AQAFTLAYQKINGDTPFDFVGGDSIYLANSIKYADFNGPGERSWQARYDLDLGTLGIPGL 349

Query: 348 SLMTRYLSGDNVD-----------------------RGAGASEGKTWERNTDIAYVFQSG 384
           S M RY++G  +D                       +GAGA   + WER+ D+ Y+ QSG
Sbjct: 350 SFMARYVTGRGIDGSHAPQGGAYNPFDSDTGTYSPQQGAGA---RHWERDLDLHYIVQSG 406

Query: 385 PLKNLGLRLRNATTRSNF---GSDLDENRFIVSYSLPL 419
           P K+L L+L + T R+N    G D+D    ++ Y L L
Sbjct: 407 PAKDLSLQLSHVTHRANSSQGGDDIDRLYIVIQYPLKL 444