Pairwise Alignments

Query, 390 a.a., integrase from Azospirillum brasilense Sp245

Subject, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score = 76.3 bits (186), Expect = 1e-18
 Identities = 82/364 (22%), Positives = 149/364 (40%), Gaps = 21/364 (5%)

Query: 4   ITKRSVDAAVPGEQEFFLWDEELKGFGLRIYPSGRKMYLAQFRAGGRLRRVNIGPHGVLT 63
           +T   V +  P ++++ L D    G  L + P+G K++  ++R  G+     IG    ++
Sbjct: 6   LTDAKVKSVKPADRDWKLSDGG--GLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVS 63

Query: 64  PDVARTEAMKHLSDVRRGSDPASERD-------------RRKASPTMKEFGKRFLEDHVA 110
              ART   K  + V++G  PA ER              +R    +  +  + +L +   
Sbjct: 64  LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKP 123

Query: 111 SHCKPTTRAEYKRSIELFINPKLGSHRIIDVSRAEVVELHQSLKAT-PYQANRTLGVLSV 169
                + R +  R I  +++PK     + D+   ++  L +  KA   + A    G LS 
Sbjct: 124 VFAHSSYRTKESR-IRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLSA 182

Query: 170 MFTVAHTWG-VRTDGVNPCWKVKRYKEVKRERYLTPDELARLGKVLRKSTSEPEAVNCIH 228
           +F  A   G V  + +     + R    + +  +T +++ +  + LR     PE   C+ 
Sbjct: 183 IFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETALCLR 242

Query: 229 LLLLTGCRLSEIQTLKWDYVDLNAGVLRLPDSKTGAK---LVTIGKAAVEVLKDIPKVTD 285
           L+ LT CR  E    +W+  D    V R P +K  A+   +  +   A+ VLKD+ ++T 
Sbjct: 243 LIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITG 302

Query: 286 NPYVITGRIEGQHLTDMQRPWRRLRKRAKLEDVRIHDLRHSFASDALQLGEDLPMIGRLL 345
               +     G+  T   R    +R          H  R +F++ A + G     I R L
Sbjct: 303 GGRYLFPHRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIERQL 362

Query: 346 GHTQ 349
            H +
Sbjct: 363 AHVE 366